{"id":143,"date":"2024-06-22T09:54:47","date_gmt":"2024-06-22T09:54:47","guid":{"rendered":"https:\/\/www.microplanet.at\/?page_id=143"},"modified":"2025-08-20T05:50:52","modified_gmt":"2025-08-20T04:50:52","slug":"publications","status":"publish","type":"page","link":"https:\/\/www.microplanet.at\/index.php\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<section class=\"wp-block-group hero-with-heading hero-with-heading-blue bg-custom-blue-200 is-layout-flow wp-block-group-is-layout-flow\">\n<div class=\"wp-block-group container is-layout-flow wp-block-group-is-layout-flow\"><h2 class=\"hero-with-heading-title wp-block-post-title\">Publications<\/h2><\/div>\n<\/section>\n\n\n\n<div class=\"wp-block-group container container-moved-top is-layout-flow wp-block-group-is-layout-flow\">\n<section class=\"wp-block-group layout-section-container bg-custom-white-100 is-layout-flow wp-block-group-is-layout-flow\">\n<p class=\"wp-block-heading h3 font-bold text-custom-purple-100 mb-4\">Filter results:<\/p>\n\n\n\n<p>e.g. name of key researcher<\/p>\n\n\n<div class=\"teachpress_pub_list\"><form name=\"tppublistform\" method=\"get\"><a name=\"tppubs\" id=\"tppubs\"><\/a><div class=\"tp_search_input\"><input name=\"tsr\" id=\"tp_search_input_field\" type=\"search\" placeholder=\"Enter search word\" value=\"\" tabindex=\"1\"\/><div class=\"teachpress_search_button\"><input name=\"tps_button\" class=\"tp_search_button\" type=\"submit\" tabindex=\"10\" value=\"Search\"\/><\/div><\/div><\/form><div class=\"tablenav\"><div class=\"tablenav-pages\"><span class=\"displaying-num\">819 entries<\/span> <a class=\"page-numbers button disabled\">&laquo;<\/a> <a class=\"page-numbers button disabled\">&lsaquo;<\/a> 1 of 21 <a href=\"https:\/\/www.microplanet.at\/index.php\/publications\/?limit=2&amp;tgid=&amp;yr=&amp;type=&amp;usr=&amp;auth=&amp;tsr=\" title=\"next page\" class=\"page-numbers button\">&rsaquo;<\/a> <a href=\"https:\/\/www.microplanet.at\/index.php\/publications\/?limit=21&amp;tgid=&amp;yr=&amp;type=&amp;usr=&amp;auth=&amp;tsr=\" title=\"last page\" class=\"page-numbers button\">&raquo;<\/a> <\/div><\/div><div class=\"teachpress_publication_list\"><p class=\"wp-block-heading h5 font-bold text-custom-purple-100 mt-4 mb-2\" id=\"tp_h4_2026\">2026<\/p><p class=\"wp-block-heading h3 font-bold text-custom-purple-100 mt-4 mb-2\">Publications of our CoE<\/p><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">1.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Karner, Thomas;  Forbes, Paul A. G.;  Berry, David;  Wagner, Isabella C.<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2503','tp_links')\" style=\"cursor:pointer;\">Gut microbial diversity and inferred capacity to produce short-chain fatty acids are associated with acute stress reactivity in healthy adults<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Neurobiology of Stress, <\/span><span class=\"tp_pub_additional_volume\">vol. 42, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2352-2895<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2503\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2503','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2503\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Karner2026,<br \/>\r\ntitle = {Gut microbial diversity and inferred capacity to produce short-chain fatty acids are associated with acute stress reactivity in healthy adults},<br \/>\r\nauthor = {Thomas Karner and Paul A.G. Forbes and David Berry and Isabella C. Wagner},<br \/>\r\ndoi = {10.1016\/j.ynstr.2026.100807},<br \/>\r\nissn = {2352-2895},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-06-01},<br \/>\r\nurldate = {2026-06-00},<br \/>\r\njournal = {Neurobiology of Stress},<br \/>\r\nvolume = {42},<br \/>\r\npublisher = {Elsevier BV},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2503','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2503\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1016\/j.ynstr.2026.100807\" title=\"Follow DOI:10.1016\/j.ynstr.2026.100807\" target=\"_blank\">doi:10.1016\/j.ynstr.2026.100807<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2503','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">2.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Spieck, Eva;  Koch, Hanna;  Kop, Linnea F. M.;  Keuter, Sabine;  Malinowski, Marcel;  Sass, Katharina;  Sand, Wolfgang;  Donati, Edgardo;  Garcia, Pablo Perez;  L\u00fccker, Sebastian;  Giaveno, Alejandra<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2512','tp_links')\" style=\"cursor:pointer;\">Cultivation\u2010Based Detection of a Novel High\u2010GC Nitrospira Derived From the Argentinian Copahue Volcano Area<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Environmental Microbiology, <\/span><span class=\"tp_pub_additional_volume\">vol. 28, <\/span><span class=\"tp_pub_additional_number\">no. 4, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1462-2920<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2512\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2512','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2512\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2512','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2512\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Spieck2026,<br \/>\r\ntitle = {Cultivation\u2010Based Detection of a Novel High\u2010GC Nitrospira Derived From the Argentinian Copahue Volcano Area},<br \/>\r\nauthor = {Eva Spieck and Hanna Koch and Linnea F. M. Kop and Sabine Keuter and Marcel Malinowski and Katharina Sass and Wolfgang Sand and Edgardo Donati and Pablo Perez Garcia and Sebastian L\u00fccker and Alejandra Giaveno},<br \/>\r\ndoi = {10.1111\/1462-2920.70290},<br \/>\r\nissn = {1462-2920},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-04-03},<br \/>\r\nurldate = {2026-04-03},<br \/>\r\njournal = {Environmental Microbiology},<br \/>\r\nvolume = {28},<br \/>\r\nnumber = {4},<br \/>\r\npublisher = {Wiley},<br \/>\r\nabstract = {&lt;jats:title&gt;ABSTRACT&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;<br \/>\r\n                    Nitrification is an essential process within the global nitrogen cycle and also occurs under extreme conditions, such as in geothermal environments. The nitrite\u2010oxidizing group<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    represents key nitrifiers in these systems, as several species inhabit hot springs worldwide. Using different initial incubation temperatures, two novel moderately thermophilic<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    enrichments,<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    sp. Vd2 and<br \/>\r\n                    &lt;jats:italic&gt;Ca&lt;\/jats:italic&gt;<br \/>\r\n                    .<br \/>\r\n                    &lt;jats:styled-content style=\"fixed-case\"&gt;<br \/>\r\n                      N.<br \/>\r\n                      &lt;jats:italic&gt;neuquenensis&lt;\/jats:italic&gt;<br \/>\r\n                    &lt;\/jats:styled-content&gt;<br \/>\r\n                    E2OT, were obtained from sulfur\u2010rich mud pools in the geothermal field Las M\u00e1quinas (Neuqu\u00e9n Province, Argentina).<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    sp. Vd2 belongs to the N.<br \/>\r\n                    &lt;jats:italic&gt;bockiana&lt;\/jats:italic&gt;<br \/>\r\n                    lineage V, whereas the second enrichment (E2OT) represents the novel taxonomic lineage VIII, together with cultures from Kamchatka (Kam\u2010Ns4a) and Garga hot springs (Ga3a). The vibrioid morphology of<br \/>\r\n                    &lt;jats:italic&gt;Ca&lt;\/jats:italic&gt;<br \/>\r\n                    .<br \/>\r\n                    &lt;jats:styled-content style=\"fixed-case\"&gt;<br \/>\r\n                      N.<br \/>\r\n                      &lt;jats:italic&gt;neuquenensis&lt;\/jats:italic&gt;<br \/>\r\n                    &lt;\/jats:styled-content&gt;<br \/>\r\n                    E2OT is strikingly different from all described, twisted rod\u2010shaped<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    . Our study expands the knowledge of the taxonomic and genomic diversity of moderately thermophilic<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    , by comparing the high\u2010quality draft genomes with those of previously described species. The recent discovery of quorum\u2010sensing genes outside the<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    lineage II was confirmed for both Argentinian cultures. Notably, the genome GC contents of the enrichments Vd2 and E2OT are 60.6% and 69.4%, respectively. The latter is the highest observed for<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    to date and might support thermotolerance up to 50\u00b0C.<br \/>\r\n                  &lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2512','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2512\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;ABSTRACT&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;<br \/>\r\n                    Nitrification is an essential process within the global nitrogen cycle and also occurs under extreme conditions, such as in geothermal environments. The nitrite\u2010oxidizing group<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    represents key nitrifiers in these systems, as several species inhabit hot springs worldwide. Using different initial incubation temperatures, two novel moderately thermophilic<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    enrichments,<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    sp. Vd2 and<br \/>\r\n                    &lt;jats:italic&gt;Ca&lt;\/jats:italic&gt;<br \/>\r\n                    .<br \/>\r\n                    &lt;jats:styled-content style=&quot;fixed-case&quot;&gt;<br \/>\r\n                      N.<br \/>\r\n                      &lt;jats:italic&gt;neuquenensis&lt;\/jats:italic&gt;<br \/>\r\n                    &lt;\/jats:styled-content&gt;<br \/>\r\n                    E2OT, were obtained from sulfur\u2010rich mud pools in the geothermal field Las M\u00e1quinas (Neuqu\u00e9n Province, Argentina).<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    sp. Vd2 belongs to the N.<br \/>\r\n                    &lt;jats:italic&gt;bockiana&lt;\/jats:italic&gt;<br \/>\r\n                    lineage V, whereas the second enrichment (E2OT) represents the novel taxonomic lineage VIII, together with cultures from Kamchatka (Kam\u2010Ns4a) and Garga hot springs (Ga3a). The vibrioid morphology of<br \/>\r\n                    &lt;jats:italic&gt;Ca&lt;\/jats:italic&gt;<br \/>\r\n                    .<br \/>\r\n                    &lt;jats:styled-content style=&quot;fixed-case&quot;&gt;<br \/>\r\n                      N.<br \/>\r\n                      &lt;jats:italic&gt;neuquenensis&lt;\/jats:italic&gt;<br \/>\r\n                    &lt;\/jats:styled-content&gt;<br \/>\r\n                    E2OT is strikingly different from all described, twisted rod\u2010shaped<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    . Our study expands the knowledge of the taxonomic and genomic diversity of moderately thermophilic<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    , by comparing the high\u2010quality draft genomes with those of previously described species. The recent discovery of quorum\u2010sensing genes outside the<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    lineage II was confirmed for both Argentinian cultures. Notably, the genome GC contents of the enrichments Vd2 and E2OT are 60.6% and 69.4%, respectively. The latter is the highest observed for<br \/>\r\n                    &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt;<br \/>\r\n                    to date and might support thermotolerance up to 50\u00b0C.<br \/>\r\n                  &lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2512','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2512\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1111\/1462-2920.70290\" title=\"Follow DOI:10.1111\/1462-2920.70290\" target=\"_blank\">doi:10.1111\/1462-2920.70290<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2512','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">3.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Krasenbrink, Julia;  Chen, Song-Can;  Tanabe, Tomohisa Sebastian;  Sarike\u00e7e, H\u00fcseyin;  Meurs, Pleun;  Borusak, Sabrina;  Samrat, Rahul;  Guan, Guoqing;  Priemer, Clara;  Osvatic, Jay;  S\u00e9neca, Joana;  Hausmann, Bela;  Speth, Daan R;  Selberherr, Evelyne;  Wanek, Wolfgang;  Schleheck, David;  Mussmann, Marc;  Loy, Alexander<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2506','tp_links')\" style=\"cursor:pointer;\">Sulfoquinovose degradation by cow rumen microbiota<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">ISME J, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1751-7370<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2506\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2506','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2506\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2506','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2506\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Krasenbrink2026,<br \/>\r\ntitle = {Sulfoquinovose degradation by cow rumen microbiota},<br \/>\r\nauthor = {Julia Krasenbrink and Song-Can Chen and Tomohisa Sebastian Tanabe and H\u00fcseyin Sarike\u00e7e and Pleun Meurs and Sabrina Borusak and Rahul Samrat and Guoqing Guan and Clara Priemer and Jay Osvatic and Joana S\u00e9neca and Bela Hausmann and Daan R Speth and Evelyne Selberherr and Wolfgang Wanek and David Schleheck and Marc Mussmann and Alexander Loy},<br \/>\r\ndoi = {10.1093\/ismejo\/wrag069},<br \/>\r\nissn = {1751-7370},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-03-27},<br \/>\r\nurldate = {2026-03-27},<br \/>\r\njournal = {ISME J},<br \/>\r\npublisher = {Oxford University Press (OUP)},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;Sulfoquinovose, a sulfonated sugar derived from the thylakoid membrane lipid sulfoquinovosyl diacylglycerol, is abundant in photosynthetic organisms and plays a key role in global sulfur cycling. Its degradation in nature is mediated by specialized bacteria, many of which rely on the enzyme sulfoquinovosidase (YihQ) to release sulfoquinovose from sulfoquinovosyl (diacyl)glycerol. Despite its ecological importance, the diversity and functional roles of sulfoquinovose-degrading microorganisms remain poorly characterized in natural environments. Here, we developed a yihQ-targeted amplicon sequencing approach to investigate the richness and distribution of SQ-degrading bacteria across selected environments. We revealed high richness of yihQ-containing microorganisms in the analyzed cow rumen samples, far exceeding that observed in human and mouse gut microbiomes, suggesting an important role of sulfoquinovose metabolism in ruminant digestion. Anoxic microcosm experiments with sulfoquinovose-amended rumen fluid revealed cooperative microbial degradation of sulfoquinovose to sulfide via isethionate cross-feeding. Amplicon sequencing and genome-resolved metagenomics and metatranscriptomics identified yet undescribed and uncultured sulfoquinovose-degrading taxa. Members of Caproiciproducens (Acutalibacteraceae), Candidatus Limivicinus (Oscillospiraceae), and Sphaerochaetaceae transcribed the isethionate-producing sulfo-transketolase pathway, whereas isethionate was likely respired by a Candidatus Mailhella bacterium (Desulfovibrionaceae). This study presents a functional gene-based assay for tracking environmental yihQ richness, highlights sulfoquinovose degradation as a central metabolic process in the cow rumen, describes previously unknown sulfoquinovose-metabolizing bacteria, and advances understanding of sulfur physiology in complex microbial communities.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2506','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2506\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;Sulfoquinovose, a sulfonated sugar derived from the thylakoid membrane lipid sulfoquinovosyl diacylglycerol, is abundant in photosynthetic organisms and plays a key role in global sulfur cycling. Its degradation in nature is mediated by specialized bacteria, many of which rely on the enzyme sulfoquinovosidase (YihQ) to release sulfoquinovose from sulfoquinovosyl (diacyl)glycerol. Despite its ecological importance, the diversity and functional roles of sulfoquinovose-degrading microorganisms remain poorly characterized in natural environments. Here, we developed a yihQ-targeted amplicon sequencing approach to investigate the richness and distribution of SQ-degrading bacteria across selected environments. We revealed high richness of yihQ-containing microorganisms in the analyzed cow rumen samples, far exceeding that observed in human and mouse gut microbiomes, suggesting an important role of sulfoquinovose metabolism in ruminant digestion. Anoxic microcosm experiments with sulfoquinovose-amended rumen fluid revealed cooperative microbial degradation of sulfoquinovose to sulfide via isethionate cross-feeding. Amplicon sequencing and genome-resolved metagenomics and metatranscriptomics identified yet undescribed and uncultured sulfoquinovose-degrading taxa. Members of Caproiciproducens (Acutalibacteraceae), Candidatus Limivicinus (Oscillospiraceae), and Sphaerochaetaceae transcribed the isethionate-producing sulfo-transketolase pathway, whereas isethionate was likely respired by a Candidatus Mailhella bacterium (Desulfovibrionaceae). This study presents a functional gene-based assay for tracking environmental yihQ richness, highlights sulfoquinovose degradation as a central metabolic process in the cow rumen, describes previously unknown sulfoquinovose-metabolizing bacteria, and advances understanding of sulfur physiology in complex microbial communities.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2506','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2506\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1093\/ismejo\/wrag069\" title=\"Follow DOI:10.1093\/ismejo\/wrag069\" target=\"_blank\">doi:10.1093\/ismejo\/wrag069<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2506','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">4.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Liu, Jiameng;  Cao, Tianchi;  Zhang, Tong;  Hofmann, Thilo;  Chen, Wei<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2473','tp_links')\" style=\"cursor:pointer;\">Per- and polyfluoroalkyl substances-driven enhancement of colloid-facilitated contaminant transport in groundwater<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Water Research, <\/span><span class=\"tp_pub_additional_volume\">vol. 292, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 0043-1354<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2473\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2473','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2473\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Liu2026,<br \/>\r\ntitle = {Per- and polyfluoroalkyl substances-driven enhancement of colloid-facilitated contaminant transport in groundwater},<br \/>\r\nauthor = {Jiameng Liu and Tianchi Cao and Tong Zhang and Thilo Hofmann and Wei Chen},<br \/>\r\ndoi = {10.1016\/j.watres.2026.125335},<br \/>\r\nissn = {0043-1354},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-03-15},<br \/>\r\nurldate = {2026-03-00},<br \/>\r\njournal = {Water Research},<br \/>\r\nvolume = {292},<br \/>\r\npublisher = {Elsevier BV},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2473','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2473\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1016\/j.watres.2026.125335\" title=\"Follow DOI:10.1016\/j.watres.2026.125335\" target=\"_blank\">doi:10.1016\/j.watres.2026.125335<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2473','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">5.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Jenab, Kian;  Alteio, Lauren;  Guseva, Ksenia;  Gorka, Stefan;  Darcy, Sean;  Fuchslueger, Lucia;  Canarini, Alberto;  Martin, Victoria;  Wiesenbauer, Julia;  Spiegel, Felix;  Imai, Bruna;  Schmidt, Hannes;  Hage-Ahmed, Karin;  P\u00f6tsch, Erich M;  Richter, Andreas;  Jansa, Jan;  Kaiser, Christina<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2497','tp_links')\" style=\"cursor:pointer;\">Arbuscular mycorrhizal fungal families and exploration-based guilds exhibit distinct responses to long-term N, P and K deficiencies and imbalances<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">New Phytol, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1469-8137<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2497\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2497','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2497\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2497','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2497\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{pmid41766386,<br \/>\r\ntitle = {Arbuscular mycorrhizal fungal families and exploration-based guilds exhibit distinct responses to long-term N, P and K deficiencies and imbalances},<br \/>\r\nauthor = {Kian Jenab and Lauren Alteio and Ksenia Guseva and Stefan Gorka and Sean Darcy and Lucia Fuchslueger and Alberto Canarini and Victoria Martin and Julia Wiesenbauer and Felix Spiegel and Bruna Imai and Hannes Schmidt and Karin Hage-Ahmed and Erich M P\u00f6tsch and Andreas Richter and Jan Jansa and Christina Kaiser},<br \/>\r\ndoi = {10.1111\/nph.70969},<br \/>\r\nissn = {1469-8137},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-03-02},<br \/>\r\nurldate = {2026-03-01},<br \/>\r\njournal = {New Phytol},<br \/>\r\nabstract = {Many agroecosystems face nitrogen (N), phosphorus (P) or potassium (K) deficiencies due to imbalanced or insufficient nutrient replenishment after biomass harvest. How this affects the symbiosis between plants and arbuscular mycorrhizal fungi (AMF) and the abundance of exploration-based AMF guilds (rhizophilic, edaphophilic and ancestral) remains largely unknown. We studied a 70-yr nutrient deficiency experiment in a managed grassland in central Austria, where aboveground biomass was harvested three times annually. N, P and K were fully, partially or not replenished, causing long-term nutrient deficiencies and imbalances. We analysed AMF communities in soil and roots by DNA\/RNA amplicon sequencing and fatty acid biomarkers, alongside soil and plant community properties. Soil AMF communities were affected by N and P deficiencies, while root AMF communities were most susceptible to K deficiency, showing up to 50% biomass reduction, particularly when N was abundant. We observed a shift from rhizophilic to ancestral guilds under P deficiency in soil, and under K deficiency in roots. Families within each guild, particularly ancestral, showed differential responses, indicating complementary nutrient specializations at the family level. Our findings underscore the previously unrecognized role of K deficiency in AMF symbiosis and suggest the existence of nutrient-related functional subgroups within exploration-based AMF guilds.},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2497','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2497\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Many agroecosystems face nitrogen (N), phosphorus (P) or potassium (K) deficiencies due to imbalanced or insufficient nutrient replenishment after biomass harvest. How this affects the symbiosis between plants and arbuscular mycorrhizal fungi (AMF) and the abundance of exploration-based AMF guilds (rhizophilic, edaphophilic and ancestral) remains largely unknown. We studied a 70-yr nutrient deficiency experiment in a managed grassland in central Austria, where aboveground biomass was harvested three times annually. N, P and K were fully, partially or not replenished, causing long-term nutrient deficiencies and imbalances. We analysed AMF communities in soil and roots by DNA\/RNA amplicon sequencing and fatty acid biomarkers, alongside soil and plant community properties. Soil AMF communities were affected by N and P deficiencies, while root AMF communities were most susceptible to K deficiency, showing up to 50% biomass reduction, particularly when N was abundant. We observed a shift from rhizophilic to ancestral guilds under P deficiency in soil, and under K deficiency in roots. Families within each guild, particularly ancestral, showed differential responses, indicating complementary nutrient specializations at the family level. Our findings underscore the previously unrecognized role of K deficiency in AMF symbiosis and suggest the existence of nutrient-related functional subgroups within exploration-based AMF guilds.<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2497','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2497\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1111\/nph.70969\" title=\"Follow DOI:10.1111\/nph.70969\" target=\"_blank\">doi:10.1111\/nph.70969<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2497','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">6.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Lee, Ui-Ju;  Gwak, Joo-Han;  Abiola, Christiana;  Lee, Seongjun;  Yoo, Jin-Sun;  Si, Ok-Ja;  Cho, Hyo Je;  Quan, Zhe-Xue;  Kitzinger, Katharina;  Daims, Holger;  Wagner, Michael;  Jung, Man-Young;  Rhee, Sung-Keun<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2500','tp_links')\" style=\"cursor:pointer;\">Kinetic Plasticity of Nitrite-Oxidizing Bacteria Containing Cytoplasmic Nitrite Oxidoreductase<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">ISME J, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1751-7370<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2500\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2500','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2500\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2500','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2500\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Lee2026,<br \/>\r\ntitle = {Kinetic Plasticity of Nitrite-Oxidizing Bacteria Containing Cytoplasmic Nitrite Oxidoreductase},<br \/>\r\nauthor = {Ui-Ju Lee and Joo-Han Gwak and Christiana Abiola and Seongjun Lee and Jin-Sun Yoo and Ok-Ja Si and Hyo Je Cho and Zhe-Xue Quan and Katharina Kitzinger and Holger Daims and Michael Wagner and Man-Young Jung and Sung-Keun Rhee},<br \/>\r\ndoi = {10.1093\/ismejo\/wrag040},<br \/>\r\nissn = {1751-7370},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-02-27},<br \/>\r\nurldate = {2026-02-27},<br \/>\r\njournal = {ISME J},<br \/>\r\npublisher = {Oxford University Press (OUP)},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;Nitrite-oxidizing bacteria (NOB) use either periplasmic (pNXR) or cytoplasmic (cNXR) nitrite oxidoreductase to oxidize nitrite, and this distinction influences nitrite affinity and energy yield. cNXR-containing NOB have historically been considered low-affinity, copiotrophic nitrifiers adapted to high nitrite and neutral pH. Here, we report a previously uncharacterized pH- and substrate-dependent modulation of nitrite affinity in cNXR NOB that is not observed in pNXR NOB and is not a universal microbial trait. Nitrobacter winogradskyi Nb-255, grown at low nitrite (1\u00a0mM), had a high apparent affinity (Km(app)\u2009=\u200925.9\u00a0\u03bcM; specific affinity ao\u2009=\u2009440.5\u00a0l\u00a0g cells\u22121\u00a0h\u22121) comparable to oligotrophic pNXR NOB. However, when grown at high nitrite (10\u00a0mM), these cells showed a low affinity at pH\u00a07.5 (Km(app)\u2009=\u2009388.0\u00a0\u03bcM) but exhibited a rapid increase in affinity upon immediate exposure to pH\u00a05.5 (Km(app)\u2009=\u200919.2\u00a0\u03bcM) without prior acid adaptation. In contrast, pNXR NOB exhibited consistent kinetic behavior across different pH conditions, underscoring that this kinetic plasticity is unique to cNXR NOB. Kinetic inhibition assays revealed that this plasticity is mechanistically underpinned by a shift from a low-affinity nitrite\/nitrate antiporter (NarK) to a high-affinity nitrite channel (NirC), coupled with enhanced HNO2 diffusion at low pH, together increasing intracellular nitrite availability. These findings establish that cNXR NOB can dynamically tune nitrite affinity via transporter-level regulation in response to nitrite concentration and pH. This novel mechanism provides a mechanistic explanation for the unexpected prevalence of Nitrobacter in acidic, low-nitrite environments, highlighting its ecological relevance.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2500','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2500\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;Nitrite-oxidizing bacteria (NOB) use either periplasmic (pNXR) or cytoplasmic (cNXR) nitrite oxidoreductase to oxidize nitrite, and this distinction influences nitrite affinity and energy yield. cNXR-containing NOB have historically been considered low-affinity, copiotrophic nitrifiers adapted to high nitrite and neutral pH. Here, we report a previously uncharacterized pH- and substrate-dependent modulation of nitrite affinity in cNXR NOB that is not observed in pNXR NOB and is not a universal microbial trait. Nitrobacter winogradskyi Nb-255, grown at low nitrite (1\u00a0mM), had a high apparent affinity (Km(app)\u2009=\u200925.9\u00a0\u03bcM; specific affinity ao\u2009=\u2009440.5\u00a0l\u00a0g cells\u22121\u00a0h\u22121) comparable to oligotrophic pNXR NOB. However, when grown at high nitrite (10\u00a0mM), these cells showed a low affinity at pH\u00a07.5 (Km(app)\u2009=\u2009388.0\u00a0\u03bcM) but exhibited a rapid increase in affinity upon immediate exposure to pH\u00a05.5 (Km(app)\u2009=\u200919.2\u00a0\u03bcM) without prior acid adaptation. In contrast, pNXR NOB exhibited consistent kinetic behavior across different pH conditions, underscoring that this kinetic plasticity is unique to cNXR NOB. Kinetic inhibition assays revealed that this plasticity is mechanistically underpinned by a shift from a low-affinity nitrite\/nitrate antiporter (NarK) to a high-affinity nitrite channel (NirC), coupled with enhanced HNO2 diffusion at low pH, together increasing intracellular nitrite availability. These findings establish that cNXR NOB can dynamically tune nitrite affinity via transporter-level regulation in response to nitrite concentration and pH. This novel mechanism provides a mechanistic explanation for the unexpected prevalence of Nitrobacter in acidic, low-nitrite environments, highlighting its ecological relevance.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2500','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2500\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1093\/ismejo\/wrag040\" title=\"Follow DOI:10.1093\/ismejo\/wrag040\" target=\"_blank\">doi:10.1093\/ismejo\/wrag040<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2500','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">7.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Wang, Baozhan;  Gao, Ping;  Zhang, Ping;  Zheng, Yue;  Liu, Xu;  Ling, Ning;  Shan, Jun;  Yao, Rongjiang;  Zhao, Shuai;  Zhang, Zhiguo;  Zhu, Guibing;  Jung, Man-Young;  Zou, Jianwen;  Yan, Xiaoyuan;  Lee, Sungeun;  Hazard, Christina;  Nicol, Graeme W;  Zhou, Jizhong;  Yang, Yunfeng;  Zhu, Yongguan;  Stahl, David A;  Wagner, Michael;  Gao, Yanzheng;  Jiang, Jiandong;  Qin, Wei<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2494','tp_links')\" style=\"cursor:pointer;\">Elevated Temperature Simulating Heatwaves Restructures Active Nitrifying Communities and Associated Viruses in Tidal Flats and Agricultural Soils<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">ISME J, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1751-7370<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2494\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2494','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2494\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2494','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2494\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Wang2026,<br \/>\r\ntitle = {Elevated Temperature Simulating Heatwaves Restructures Active Nitrifying Communities and Associated Viruses in Tidal Flats and Agricultural Soils},<br \/>\r\nauthor = {Baozhan Wang and Ping Gao and Ping Zhang and Yue Zheng and Xu Liu and Ning Ling and Jun Shan and Rongjiang Yao and Shuai Zhao and Zhiguo Zhang and Guibing Zhu and Man-Young Jung and Jianwen Zou and Xiaoyuan Yan and Sungeun Lee and Christina Hazard and Graeme W Nicol and Jizhong Zhou and Yunfeng Yang and Yongguan Zhu and David A Stahl and Michael Wagner and Yanzheng Gao and Jiandong Jiang and Wei Qin},<br \/>\r\ndoi = {10.1093\/ismejo\/wrag037},<br \/>\r\nissn = {1751-7370},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-02-20},<br \/>\r\nurldate = {2026-02-20},<br \/>\r\njournal = {ISME J},<br \/>\r\npublisher = {Oxford University Press (OUP)},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;Global heatwave intensification under climate change will impact the nitrogen cycle, yet its effect on active nitrifier groups or their interactions with viruses remains unclear. Using 13CO2-DNA-based stable-isotope probing coupled with metagenomics, we show that elevated temperatures under heatwave conditions fundamentally restructure active nitrifying communities and their associated viruses in Yangtze River estuary upper tidal flats and adjacent agricultural soils. In tidal flats, sustained high temperature constrained nitrification by reducing the abundance of active ammonia-oxidizing archaea and bacteria (AOA, AOB) and canonical nitrite-oxidizing bacteria (NOB). This was accompanied by a shift in the active community from marine to more thermotolerant but less salt-tolerant terrestrial ecotypes. Conversely, heatwave conditions in agricultural soils suppressed AOB but enhanced nitrification activity in thermotolerant terrestrial AOA ecotypes. Across both ecosystems, inferred virus-nitrifier interactions were temperature dependent. 13C-labeled nitrifier-infecting viruses exhibited coordinated shifts in virus-to-host abundance ratios and predicted lifestyles with their hosts, with sustained high temperatures reducing virus-to-host abundance ratios and favoring temperate infections, relative to higher abundance ratios and a greater proportion of predicted lytic cycles at lower temperatures. We identified AOA-infecting viruses that carry plastocyanin (pcy), encoding a key copper-dependent electron carrier in the AOA respiratory chain, with conserved active sites and a predicted protein fold that supports its capacity for electron transfer, potentially augmenting host energy metabolism. Together, our findings demonstrate that prolonged heatwaves drive coupled shifts in nitrifier community composition and virus\u2013host interaction strategies in a land-use\u2013dependent manner, with implications for nitrogen transformations and ecosystem feedbacks under climate extremes.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2494','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2494\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;Global heatwave intensification under climate change will impact the nitrogen cycle, yet its effect on active nitrifier groups or their interactions with viruses remains unclear. Using 13CO2-DNA-based stable-isotope probing coupled with metagenomics, we show that elevated temperatures under heatwave conditions fundamentally restructure active nitrifying communities and their associated viruses in Yangtze River estuary upper tidal flats and adjacent agricultural soils. In tidal flats, sustained high temperature constrained nitrification by reducing the abundance of active ammonia-oxidizing archaea and bacteria (AOA, AOB) and canonical nitrite-oxidizing bacteria (NOB). This was accompanied by a shift in the active community from marine to more thermotolerant but less salt-tolerant terrestrial ecotypes. Conversely, heatwave conditions in agricultural soils suppressed AOB but enhanced nitrification activity in thermotolerant terrestrial AOA ecotypes. Across both ecosystems, inferred virus-nitrifier interactions were temperature dependent. 13C-labeled nitrifier-infecting viruses exhibited coordinated shifts in virus-to-host abundance ratios and predicted lifestyles with their hosts, with sustained high temperatures reducing virus-to-host abundance ratios and favoring temperate infections, relative to higher abundance ratios and a greater proportion of predicted lytic cycles at lower temperatures. We identified AOA-infecting viruses that carry plastocyanin (pcy), encoding a key copper-dependent electron carrier in the AOA respiratory chain, with conserved active sites and a predicted protein fold that supports its capacity for electron transfer, potentially augmenting host energy metabolism. Together, our findings demonstrate that prolonged heatwaves drive coupled shifts in nitrifier community composition and virus\u2013host interaction strategies in a land-use\u2013dependent manner, with implications for nitrogen transformations and ecosystem feedbacks under climate extremes.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2494','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2494\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1093\/ismejo\/wrag037\" title=\"Follow DOI:10.1093\/ismejo\/wrag037\" target=\"_blank\">doi:10.1093\/ismejo\/wrag037<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2494','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">8.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Mohammadzadeh, Rokhsareh;  Mahnert, Alexander;  Zurabishvili, Tamara;  Wink, Lisa;  Kumpitsch, Christina;  Habisch, Hansjoerg;  Sprengel, Jannik;  Filek, Klara;  Mertelj, Polona;  Pernitsch, Dominique;  Hingerl, Kerstin;  Durdevic, Marija;  Gorkiewicz, Gregor;  Diener, Christian;  Loy, Alexander;  Kolb, Dagmar;  Trautwein, Christoph;  Madl, Tobias;  Moissl-Eichinger, Christine<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2488','tp_links')\" style=\"cursor:pointer;\">Cross-domain metabolic interactions link Methanobrevibacter smithii to colorectal cancer microbial ecosystems<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nat Commun, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2041-1723<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2488\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2488','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2488\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2488','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2488\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Mohammadzadeh2026,<br \/>\r\ntitle = {Cross-domain metabolic interactions link Methanobrevibacter smithii to colorectal cancer microbial ecosystems},<br \/>\r\nauthor = {Rokhsareh Mohammadzadeh and Alexander Mahnert and Tamara Zurabishvili and Lisa Wink and Christina Kumpitsch and Hansjoerg Habisch and Jannik Sprengel and Klara Filek and Polona Mertelj and Dominique Pernitsch and Kerstin Hingerl and Marija Durdevic and Gregor Gorkiewicz and Christian Diener and Alexander Loy and Dagmar Kolb and Christoph Trautwein and Tobias Madl and Christine Moissl-Eichinger},<br \/>\r\ndoi = {10.1038\/s41467-026-69711-7},<br \/>\r\nissn = {2041-1723},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-02-20},<br \/>\r\nurldate = {2026-02-20},<br \/>\r\njournal = {Nat Commun},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;<br \/>\r\n                    The human gut is colonized by trillions of microbes that influence the health of their human host. Whereas many bacterial species have now been linked to a variety of different diseases, the involvement of Archaea, an evolutionarily distinct group of microbes, in human disease remains elusive. By analyzing 19 independent clinical studies, we demonstrate that associations between Archaea and human diseases are widespread yet highly heterogeneous, with a pronounced and consistent enrichment of<br \/>\r\n                    &lt;jats:italic&gt;Methanobrevibacter smithii&lt;\/jats:italic&gt;<br \/>\r\n                    in colorectal cancer (CRC) patients. Metabolic modelling and in vitro co-culture identified distinct mutualistic interactions of<br \/>\r\n                    &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt;<br \/>\r\n                    with CRC-causing bacteria such as<br \/>\r\n                    &lt;jats:italic&gt;Fusobacterium nucleatum&lt;\/jats:italic&gt;<br \/>\r\n                    , including metabolic enhancement. Metabolomics further reveal archaeal-derived compounds with tumor-modulating properties. Together, our results provide mechanistic insights into how the human gut archaeome may participate in CRC-associated microbial networks through metabolic cooperation with bacteria.<br \/>\r\n                  &lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2488','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2488\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:p&gt;<br \/>\r\n                    The human gut is colonized by trillions of microbes that influence the health of their human host. Whereas many bacterial species have now been linked to a variety of different diseases, the involvement of Archaea, an evolutionarily distinct group of microbes, in human disease remains elusive. By analyzing 19 independent clinical studies, we demonstrate that associations between Archaea and human diseases are widespread yet highly heterogeneous, with a pronounced and consistent enrichment of<br \/>\r\n                    &lt;jats:italic&gt;Methanobrevibacter smithii&lt;\/jats:italic&gt;<br \/>\r\n                    in colorectal cancer (CRC) patients. Metabolic modelling and in vitro co-culture identified distinct mutualistic interactions of<br \/>\r\n                    &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt;<br \/>\r\n                    with CRC-causing bacteria such as<br \/>\r\n                    &lt;jats:italic&gt;Fusobacterium nucleatum&lt;\/jats:italic&gt;<br \/>\r\n                    , including metabolic enhancement. Metabolomics further reveal archaeal-derived compounds with tumor-modulating properties. Together, our results provide mechanistic insights into how the human gut archaeome may participate in CRC-associated microbial networks through metabolic cooperation with bacteria.<br \/>\r\n                  &lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2488','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2488\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s41467-026-69711-7\" title=\"Follow DOI:10.1038\/s41467-026-69711-7\" target=\"_blank\">doi:10.1038\/s41467-026-69711-7<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2488','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">9.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Cuparencu, Catalina;  Diener, Christian;  Wilson, Thomas;  Gibbons, Sean M.;  Lucassen, Desiree A.<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2476','tp_links')\" style=\"cursor:pointer;\">Integration of modern technologies to advance dietary assessment<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nat Food, <\/span><span class=\"tp_pub_additional_volume\">vol. 7, <\/span><span class=\"tp_pub_additional_number\">no. 1, <\/span><span class=\"tp_pub_additional_pages\">pp. 17\u201326, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2662-1355<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2476\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2476','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2476\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Cuparencu2026,<br \/>\r\ntitle = {Integration of modern technologies to advance dietary assessment},<br \/>\r\nauthor = {Catalina Cuparencu and Christian Diener and Thomas Wilson and Sean M. Gibbons and Desiree A. Lucassen},<br \/>\r\ndoi = {10.1038\/s43016-025-01290-0},<br \/>\r\nissn = {2662-1355},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-01-26},<br \/>\r\nurldate = {2026-01-00},<br \/>\r\njournal = {Nat Food},<br \/>\r\nvolume = {7},<br \/>\r\nnumber = {1},<br \/>\r\npages = {17--26},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2476','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2476\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s43016-025-01290-0\" title=\"Follow DOI:10.1038\/s43016-025-01290-0\" target=\"_blank\">doi:10.1038\/s43016-025-01290-0<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2476','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">10.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Holub, Elisabeth;  Hondl, Nikolaus;  Lin, Kai-Lan;  Parikainen, Marjaana;  Sahlgren, Cecilia;  Lendl, Bernhard;  Ramer, Georg<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2482','tp_links')\" style=\"cursor:pointer;\">Investigating Spectral Biomarker Candidates for Migratory Potential in Cancer Cells Using Micro-FTIR and O-PTIR Spectroscopy<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">ACS Meas. Sci. Au, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2694-250X<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2482\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2482','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2482\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Holub2026,<br \/>\r\ntitle = {Investigating Spectral Biomarker Candidates for Migratory Potential in Cancer Cells Using Micro-FTIR and O-PTIR Spectroscopy},<br \/>\r\nauthor = {Elisabeth Holub and Nikolaus Hondl and Kai-Lan Lin and Marjaana Parikainen and Cecilia Sahlgren and Bernhard Lendl and Georg Ramer},<br \/>\r\ndoi = {10.1021\/acsmeasuresciau.5c00132},<br \/>\r\nissn = {2694-250X},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-01-21},<br \/>\r\njournal = {ACS Meas. Sci. Au},<br \/>\r\npublisher = {American Chemical Society (ACS)},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2482','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2482\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1021\/acsmeasuresciau.5c00132\" title=\"Follow DOI:10.1021\/acsmeasuresciau.5c00132\" target=\"_blank\">doi:10.1021\/acsmeasuresciau.5c00132<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2482','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">11.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Sherman, Anya;  Lotteraner, Laura;  Maruschka, Leah K.;  Hofmann, Thilo<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2470','tp_links')\" style=\"cursor:pointer;\">Minor influence of climbing hall characteristics on rubber-derived compound contamination highlights a need for material-level solutions<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Environ. Sci.: Processes Impacts, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2050-7895<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2470\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2470','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2470\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2470','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2470\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Sherman2026,<br \/>\r\ntitle = {Minor influence of climbing hall characteristics on rubber-derived compound contamination highlights a need for material-level solutions},<br \/>\r\nauthor = {Anya Sherman and Laura Lotteraner and Leah K. Maruschka and Thilo Hofmann},<br \/>\r\ndoi = {10.1039\/d5em00812c},<br \/>\r\nissn = {2050-7895},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-01-06},<br \/>\r\nurldate = {2026-00-00},<br \/>\r\njournal = {Environ. Sci.: Processes Impacts},<br \/>\r\npublisher = {Royal Society of Chemistry (RSC)},<br \/>\r\nabstract = {&lt;jats:p&gt;Climbing shoe abrasion generates fine rubber particles, leading to elevated concentrations of rubber-derived compounds (RDCs) in airborne particulate matter and settled dust of indoor climbing halls, in some cases comparable...&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2470','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2470\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:p&gt;Climbing shoe abrasion generates fine rubber particles, leading to elevated concentrations of rubber-derived compounds (RDCs) in airborne particulate matter and settled dust of indoor climbing halls, in some cases comparable...&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2470','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2470\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1039\/d5em00812c\" title=\"Follow DOI:10.1039\/d5em00812c\" target=\"_blank\">doi:10.1039\/d5em00812c<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2470','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">12.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Lotteraner, Laura;  M\u00f6ller, Torsten;  Hofmann, Thilo<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2446','tp_links')\" style=\"cursor:pointer;\">The Importance of Being Thorough: How Data Analysis Choices Impact the Perceived Relationship between Pollutants and Predictors<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Water Research, <\/span><span class=\"tp_pub_additional_volume\">vol. 288, <\/span><span class=\"tp_pub_additional_year\">2026<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 0043-1354<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2446\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2446','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2446\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Lotteraner2026,<br \/>\r\ntitle = {The Importance of Being Thorough: How Data Analysis Choices Impact the Perceived Relationship between Pollutants and Predictors},<br \/>\r\nauthor = {Laura Lotteraner and Torsten M\u00f6ller and Thilo Hofmann},<br \/>\r\ndoi = {10.1016\/j.watres.2025.124639},<br \/>\r\nissn = {0043-1354},<br \/>\r\nyear  = {2026},<br \/>\r\ndate = {2026-01-01},<br \/>\r\nurldate = {2026-01-00},<br \/>\r\njournal = {Water Research},<br \/>\r\nvolume = {288},<br \/>\r\npublisher = {Elsevier BV},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2446','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2446\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1016\/j.watres.2025.124639\" title=\"Follow DOI:10.1016\/j.watres.2025.124639\" target=\"_blank\">doi:10.1016\/j.watres.2025.124639<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2446','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><p class=\"wp-block-heading h5 font-bold text-custom-purple-100 mt-4 mb-2\" id=\"tp_h4_2025\">2025<\/p><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">13.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Singleton, C. M.;  Jensen, T. B. N.;  Delogu, F.;  Knudsen, K. S.;  S\u00f8rensen, E. A.;  J\u00f8rgensen, V. R.;  Karst, S. M.;  Yang, Y.;  Sereika, M.;  Petriglieri, F.;  Knutsson, S.;  Dall, S. M.;  Kirkegaard, R. H.;  Kristensen, J. M.;  Overgaard, C. K.;  Woodcroft, B. J.;  Speth, D. R.;  Aroney, S. T. N.; and Henning C. Thomsen,;  Christensen, Bent T.; de Jonge, Lis W.;  Danielsen, Anne-Cathrine S.;  Hermansen, Cecilie;  Greve, Mogens H.;  Ejrn\u00e6s, Rasmus;  Davidson, Thomas A.;  Normand, Signe;  Treier, Urs A.;  Madsen, Bjarke;  Schramm, Andreas;  Marshall, Ian P. G.;  Dam, Ann-Sofie;  Kjeldsen, Kasper U.;  Finster, Kai;  Thomsen, Philip F.;  Sigsgaard, Eva E.;  Klepke, Martin J.;  Vesterg\u00e5rd, Marie;  Aude, Erik;  Thomsen, Lene;  Lemming, Camilla;  H\u00f8rfarter, Rita;  Jensen, Marlene M.;  Fr\u00f8slev, Tobias G.;  Gram, Lone;  Svendsen, Peter B.;  Schostag, Morten Dencker;  Kjellerup, Sanne;  Skovhus, Torben L.;  S\u00f8borg, Ditte A.;  Reitzel, Kasper;  Pedersen, J\u00f8rgen F.;  Giguere, Andrew;  Pedersen, Inge S.;  S\u00f8nderk\u00e6r, Mads;  Vollertsen, Jes;  Liu, Fan;  Roslev, Peter;  Iversen, Niels;  Nielsen, K\u00e5re L.; de Jonge, Nadieh;  Bruhn, Dan;  Nielsen, Jeppe L.;  Kristensen, Torsten N.;  Jiang, Chenjing;  Nierychlo, Marta A.;  Dottorini, Giulia;  Wagner, M.;  Dueholm, M. K. D.;  Nielsen, P. H.;  Albertsen, M.<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2464','tp_links')\" style=\"cursor:pointer;\">The\u00a0Microflora Danica atlas of Danish environmental microbiomes<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nature, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1476-4687<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2464\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2464','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2464\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Singleton2025,<br \/>\r\ntitle = {The\u00a0Microflora Danica atlas of Danish environmental microbiomes},<br \/>\r\nauthor = {C. M. Singleton and T. B. N. Jensen and F. Delogu and K. S. Knudsen and E. A. S\u00f8rensen and V. R. J\u00f8rgensen and S. M. Karst and Y. Yang and M. Sereika and F. Petriglieri and S. Knutsson and S. M. Dall and R. H. Kirkegaard and J. M. Kristensen and C. K. Overgaard and B. J. Woodcroft and D. R. Speth and S. T. N. Aroney and and Henning C. Thomsen and Bent T. Christensen and Lis W. de Jonge and Anne-Cathrine S. Danielsen and Cecilie Hermansen and Mogens H. Greve and Rasmus Ejrn\u00e6s and Thomas A. Davidson and Signe Normand and Urs A. Treier and Bjarke Madsen and Andreas Schramm and Ian P. G. Marshall and Ann-Sofie Dam and Kasper U. Kjeldsen and Kai Finster and Philip F. Thomsen and Eva E. Sigsgaard and Martin J. Klepke and Marie Vesterg\u00e5rd and Erik Aude and Lene Thomsen and Camilla Lemming and Rita H\u00f8rfarter and Marlene M. Jensen and Tobias G. Fr\u00f8slev and Lone Gram and Peter B. Svendsen and Morten Dencker Schostag and Sanne Kjellerup and Torben L. Skovhus and Ditte A. S\u00f8borg and Kasper Reitzel and J\u00f8rgen F. Pedersen and Andrew Giguere and Inge S. Pedersen and Mads S\u00f8nderk\u00e6r and Jes Vollertsen and Fan Liu and Peter Roslev and Niels Iversen and K\u00e5re L. Nielsen and Nadieh de Jonge and Dan Bruhn and Jeppe L. Nielsen and Torsten N. Kristensen and Chenjing Jiang and Marta A. Nierychlo and Giulia Dottorini and M. Wagner and M. K. D. Dueholm and P. H. Nielsen and M. Albertsen},<br \/>\r\ndoi = {10.1038\/s41586-025-09794-2},<br \/>\r\nissn = {1476-4687},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-12-03},<br \/>\r\nurldate = {2025-12-03},<br \/>\r\njournal = {Nature},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2464','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2464\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s41586-025-09794-2\" title=\"Follow DOI:10.1038\/s41586-025-09794-2\" target=\"_blank\">doi:10.1038\/s41586-025-09794-2<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2464','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">14.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Pl\u00f6chl, Konstantin;  B\u00f6ttcher, Thomas<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2449','tp_links')\" style=\"cursor:pointer;\">A novel class of small-molecule inhibitors targeting bacteriophage infection<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">RSC Chem. Biol., <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2633-0679<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2449\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2449','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2449\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2449','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2449\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Pl\u00f6chl2025,<br \/>\r\ntitle = {A novel class of small-molecule inhibitors targeting bacteriophage infection},<br \/>\r\nauthor = {Konstantin Pl\u00f6chl and Thomas B\u00f6ttcher},<br \/>\r\ndoi = {10.1039\/d5cb00120j},<br \/>\r\nissn = {2633-0679},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-12-01},<br \/>\r\nurldate = {2025-00-00},<br \/>\r\njournal = {RSC Chem. Biol.},<br \/>\r\npublisher = {Royal Society of Chemistry (RSC)},<br \/>\r\nabstract = {&lt;jats:p&gt;Discovery of benzimidazylpyrazoles as a new class of synthetic bacteriophage antivirals provides a chemical tool enabling the study of disease-related phage\u2013host interactions.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2449','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2449\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:p&gt;Discovery of benzimidazylpyrazoles as a new class of synthetic bacteriophage antivirals provides a chemical tool enabling the study of disease-related phage\u2013host interactions.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2449','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2449\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1039\/d5cb00120j\" title=\"Follow DOI:10.1039\/d5cb00120j\" target=\"_blank\">doi:10.1039\/d5cb00120j<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2449','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">15.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Krasenbrink, Julia;  Hanson, Buck T.;  Weiss, Anna S.;  Borusak, Sabrina;  Tanabe, Tomohisa Sebastian;  Lang, Michaela;  Aichinger, Georg;  Hausmann, Bela;  Berry, David;  Richter, Andreas;  Marko, Doris;  Mussmann, Marc;  Schleheck, David;  Stecher, B\u00e4rbel;  Loy, Alexander<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('16','tp_links')\" style=\"cursor:pointer;\">Sulfoquinovose is exclusively metabolized by the gut microbiota and degraded differently in mice and humans<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Microbiome, <\/span><span class=\"tp_pub_additional_volume\">vol. 13, <\/span><span class=\"tp_pub_additional_number\">no. 1, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2049-2618<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_16\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('16','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_16\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('16','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_16\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Krasenbrink2025,<br \/>\r\ntitle = {Sulfoquinovose is exclusively metabolized by the gut microbiota and degraded differently in mice and humans},<br \/>\r\nauthor = {Julia Krasenbrink and Buck T. Hanson and Anna S. Weiss and Sabrina Borusak and Tomohisa Sebastian Tanabe and Michaela Lang and Georg Aichinger and Bela Hausmann and David Berry and Andreas Richter and Doris Marko and Marc Mussmann and David Schleheck and B\u00e4rbel Stecher and Alexander Loy},<br \/>\r\ndoi = {10.1186\/s40168-025-02175-x},<br \/>\r\nissn = {2049-2618},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-12-00},<br \/>\r\njournal = {Microbiome},<br \/>\r\nvolume = {13},<br \/>\r\nnumber = {1},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Background&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Sulfoquinovose (SQ) is a green-diet-derived sulfonated glucose and a selective substrate for a limited number of human gut bacteria. Complete anaerobic SQ degradation via interspecies metabolite transfer to sulfonate-respiring bacteria produces hydrogen sulfide, which has dose- and context-dependent health effects. Here, we studied potential SQ degradation by the mammalian host and the impact of SQ supplementation on human and murine gut microbiota diversity and metabolism.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Results&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt; <br \/>\r\n &lt;jats:sup&gt;13&lt;\/jats:sup&gt;CO&lt;jats:sub&gt;2&lt;\/jats:sub&gt; breath tests with germ-free C57BL\/6 mice gavaged with &lt;jats:sup&gt;13&lt;\/jats:sup&gt;C-SQ were negative. Also, SQ was not degraded by human intestinal cells in vitro, indicating that SQ is not directly metabolized by mice and humans. Addition of increasing SQ concentrations to human fecal microcosms revealed dose-dependent responses of the microbiota and corroborated the relevance of &lt;jats:italic&gt;Agathobacter rectalis&lt;\/jats:italic&gt; and &lt;jats:italic&gt;Bilophila wadsworthia&lt;\/jats:italic&gt; in cooperative degradation of SQ to hydrogen sulfide via interspecies transfer of 2,3-dihydroxy-1-propanesulfonate (DHPS). Similar to the human gut microbiome, the genetic capacity for SQ or DHPS degradation is sparsely distributed among bacterial species in the gut of conventional laboratory mice. &lt;jats:italic&gt;Escherichia coli&lt;\/jats:italic&gt; and &lt;jats:italic&gt;Enterocloster clostridioformis&lt;\/jats:italic&gt; were identified as primary SQ degraders in the mouse gut. SQ and DHPS supplementation experiments with conventional laboratory mice and their intestinal contents showed that SQ was incompletely catabolized to DHPS. Although some &lt;jats:italic&gt;E. clostridioformis&lt;\/jats:italic&gt; genomes encode an extended sulfoglycolytic pathway for both SQ and DHPS fermentation, SQ was only degraded to DHPS by a mouse-derived &lt;jats:italic&gt;E. clostridioformis&lt;\/jats:italic&gt; strain.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Conclusions&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Our findings suggest that SQ is solely a nutrient for the gut microbiota and not for mice and humans, emphasizing its potential as a prebiotic. SQ degradation by the microbiota of conventional laboratory mice differs from the human gut microbiota by absence of DHPS degradation activity. Hence, the microbiota of conventional laboratory mice does not fully represent the SQ metabolism in humans, indicating the need for alternative model systems to assess the impact of SQ on human health. This study advances our understanding of how individual dietary compounds shape the microbial community structure and metabolism in the gut and thereby potentially influence host health.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('16','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_16\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Background&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Sulfoquinovose (SQ) is a green-diet-derived sulfonated glucose and a selective substrate for a limited number of human gut bacteria. Complete anaerobic SQ degradation via interspecies metabolite transfer to sulfonate-respiring bacteria produces hydrogen sulfide, which has dose- and context-dependent health effects. Here, we studied potential SQ degradation by the mammalian host and the impact of SQ supplementation on human and murine gut microbiota diversity and metabolism.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Results&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt; <br \/>\r\n &lt;jats:sup&gt;13&lt;\/jats:sup&gt;CO&lt;jats:sub&gt;2&lt;\/jats:sub&gt; breath tests with germ-free C57BL\/6 mice gavaged with &lt;jats:sup&gt;13&lt;\/jats:sup&gt;C-SQ were negative. Also, SQ was not degraded by human intestinal cells in vitro, indicating that SQ is not directly metabolized by mice and humans. Addition of increasing SQ concentrations to human fecal microcosms revealed dose-dependent responses of the microbiota and corroborated the relevance of &lt;jats:italic&gt;Agathobacter rectalis&lt;\/jats:italic&gt; and &lt;jats:italic&gt;Bilophila wadsworthia&lt;\/jats:italic&gt; in cooperative degradation of SQ to hydrogen sulfide via interspecies transfer of 2,3-dihydroxy-1-propanesulfonate (DHPS). Similar to the human gut microbiome, the genetic capacity for SQ or DHPS degradation is sparsely distributed among bacterial species in the gut of conventional laboratory mice. &lt;jats:italic&gt;Escherichia coli&lt;\/jats:italic&gt; and &lt;jats:italic&gt;Enterocloster clostridioformis&lt;\/jats:italic&gt; were identified as primary SQ degraders in the mouse gut. SQ and DHPS supplementation experiments with conventional laboratory mice and their intestinal contents showed that SQ was incompletely catabolized to DHPS. Although some &lt;jats:italic&gt;E. clostridioformis&lt;\/jats:italic&gt; genomes encode an extended sulfoglycolytic pathway for both SQ and DHPS fermentation, SQ was only degraded to DHPS by a mouse-derived &lt;jats:italic&gt;E. clostridioformis&lt;\/jats:italic&gt; strain.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Conclusions&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Our findings suggest that SQ is solely a nutrient for the gut microbiota and not for mice and humans, emphasizing its potential as a prebiotic. SQ degradation by the microbiota of conventional laboratory mice differs from the human gut microbiota by absence of DHPS degradation activity. Hence, the microbiota of conventional laboratory mice does not fully represent the SQ metabolism in humans, indicating the need for alternative model systems to assess the impact of SQ on human health. This study advances our understanding of how individual dietary compounds shape the microbial community structure and metabolism in the gut and thereby potentially influence host health.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('16','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_16\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1186\/s40168-025-02175-x\" title=\"Follow DOI:10.1186\/s40168-025-02175-x\" target=\"_blank\">doi:10.1186\/s40168-025-02175-x<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('16','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">16.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Weinberger, Viktoria;  Darnhofer, Barbara;  Thapa, Himadri B.;  Mertelj, Polona;  Stentz, R\u00e9gis;  Jones, Emily;  Grabmann, Gerlinde;  Mohammadzadeh, Rokhsareh;  Shinde, Tejus;  Karner, Christina;  Ober, Jennifer;  Juodeikis, Rokas;  Pernitsch, Dominique;  Hingerl, Kerstin;  Zurabishvili, Tamara;  Kumpitsch, Christina;  Kuehnast, Torben;  Rinner, Beate;  Strohmaier, Heimo;  Kolb, Dagmar;  Gotts, Kathryn;  Weichhart, Thomas;  K\u00f6cher, Thomas;  K\u00f6feler, Harald;  Carding, Simon R.;  Schild, Stefan;  Moissl-Eichinger, Christine<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('10','tp_links')\" style=\"cursor:pointer;\">Proteomic and metabolomic profiling of extracellular vesicles produced by human gut archaea<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nat Commun, <\/span><span class=\"tp_pub_additional_volume\">vol. 16, <\/span><span class=\"tp_pub_additional_number\">no. 1, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2041-1723<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_10\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('10','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_10\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('10','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_10\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Weinberger2025b,<br \/>\r\ntitle = {Proteomic and metabolomic profiling of extracellular vesicles produced by human gut archaea},<br \/>\r\nauthor = {Viktoria Weinberger and Barbara Darnhofer and Himadri B. Thapa and Polona Mertelj and R\u00e9gis Stentz and Emily Jones and Gerlinde Grabmann and Rokhsareh Mohammadzadeh and Tejus Shinde and Christina Karner and Jennifer Ober and Rokas Juodeikis and Dominique Pernitsch and Kerstin Hingerl and Tamara Zurabishvili and Christina Kumpitsch and Torben Kuehnast and Beate Rinner and Heimo Strohmaier and Dagmar Kolb and Kathryn Gotts and Thomas Weichhart and Thomas K\u00f6cher and Harald K\u00f6feler and Simon R. Carding and Stefan Schild and Christine Moissl-Eichinger},<br \/>\r\ndoi = {10.1038\/s41467-025-60271-w},<br \/>\r\nissn = {2041-1723},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-12-00},<br \/>\r\njournal = {Nat Commun},<br \/>\r\nvolume = {16},<br \/>\r\nnumber = {1},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Gastrointestinal bacteria interact with the host and each other through various mechanisms, including the production of extracellular vesicles\u00a0(EVs). However, the composition and potential roles of EVs released by gut archaea are poorly understood. Here, we study EVs produced by four strains of human gut-derived methanogenic archaea: &lt;jats:italic&gt;Methanobrevibacter smithii&lt;\/jats:italic&gt; ALI, &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; GRAZ-2, &lt;jats:italic&gt;M. intestini&lt;\/jats:italic&gt;, and &lt;jats:italic&gt;Methanosphaera stadtmanae&lt;\/jats:italic&gt;. The size (~130\u2009nm) and morphology of these EVs are comparable to those of bacterial EVs. Proteomic and metabolomic analyses reveal that the archaeal EVs are enriched in putative adhesins or adhesin-like proteins, free glutamic and aspartic acid, and choline glycerophosphate. The archaeal EVs are taken up by macrophages in vitro and elicit species-specific responses in immune and epithelial cell lines, including production of chemokines such as CXCL9, CXCL11, and CX3CL1. The EVs produced by &lt;jats:italic&gt;M. intestini&lt;\/jats:italic&gt; strongly induce pro-inflammatory cytokine IL-8 in epithelial cells. Future work should examine whether archaeal EVs play roles in the interactions of archaea with other gut microbes and with the host.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('10','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_10\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Gastrointestinal bacteria interact with the host and each other through various mechanisms, including the production of extracellular vesicles\u00a0(EVs). However, the composition and potential roles of EVs released by gut archaea are poorly understood. Here, we study EVs produced by four strains of human gut-derived methanogenic archaea: &lt;jats:italic&gt;Methanobrevibacter smithii&lt;\/jats:italic&gt; ALI, &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; GRAZ-2, &lt;jats:italic&gt;M. intestini&lt;\/jats:italic&gt;, and &lt;jats:italic&gt;Methanosphaera stadtmanae&lt;\/jats:italic&gt;. The size (~130\u2009nm) and morphology of these EVs are comparable to those of bacterial EVs. Proteomic and metabolomic analyses reveal that the archaeal EVs are enriched in putative adhesins or adhesin-like proteins, free glutamic and aspartic acid, and choline glycerophosphate. The archaeal EVs are taken up by macrophages in vitro and elicit species-specific responses in immune and epithelial cell lines, including production of chemokines such as CXCL9, CXCL11, and CX3CL1. The EVs produced by &lt;jats:italic&gt;M. intestini&lt;\/jats:italic&gt; strongly induce pro-inflammatory cytokine IL-8 in epithelial cells. Future work should examine whether archaeal EVs play roles in the interactions of archaea with other gut microbes and with the host.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('10','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_10\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s41467-025-60271-w\" title=\"Follow DOI:10.1038\/s41467-025-60271-w\" target=\"_blank\">doi:10.1038\/s41467-025-60271-w<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('10','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">17.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Jancheva, Magdalena;  Nguyen, Thi-Hong Nhung;  Anderl, Felix;  Joge, Shubham;  Neubauer, Jessica;  Rominger-Baumann, Clarissa;  Walter, Alexandra;  Storch, Golo;  B\u00f6ttcher, Thomas<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2458','tp_links')\" style=\"cursor:pointer;\">A phage-selective trigger hints at an SOS-independent mechanism of prophage induction by oxidative stress<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Chem. Sci., <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2041-6539<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2458\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2458','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2458\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2458','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2458\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Jancheva2025,<br \/>\r\ntitle = {A phage-selective trigger hints at an SOS-independent mechanism of prophage induction by oxidative stress},<br \/>\r\nauthor = {Magdalena Jancheva and Thi-Hong Nhung Nguyen and Felix Anderl and Shubham Joge and Jessica Neubauer and Clarissa Rominger-Baumann and Alexandra Walter and Golo Storch and Thomas B\u00f6ttcher},<br \/>\r\ndoi = {10.1039\/d5sc04923g},<br \/>\r\nissn = {2041-6539},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-11-29},<br \/>\r\nurldate = {2025-00-00},<br \/>\r\njournal = {Chem. Sci.},<br \/>\r\npublisher = {Royal Society of Chemistry (RSC)},<br \/>\r\nabstract = {&lt;jats:p&gt;<br \/>\r\n                    We report an SOS-independent mechanism of selective prophage induction in a poly-lysogenic<br \/>\r\n                    &lt;jats:italic&gt;Staphylococcus aureus&lt;\/jats:italic&gt;<br \/>\r\n                    host triggered by redox cycling of phenazine compounds.<br \/>\r\n                  &lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2458','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2458\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:p&gt;<br \/>\r\n                    We report an SOS-independent mechanism of selective prophage induction in a poly-lysogenic<br \/>\r\n                    &lt;jats:italic&gt;Staphylococcus aureus&lt;\/jats:italic&gt;<br \/>\r\n                    host triggered by redox cycling of phenazine compounds.<br \/>\r\n                  &lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2458','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2458\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1039\/d5sc04923g\" title=\"Follow DOI:10.1039\/d5sc04923g\" target=\"_blank\">doi:10.1039\/d5sc04923g<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2458','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">18.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Speth, Daan R;  Pullen, Nick;  Aroney, Samuel T N;  Coltman, Benjamin L;  Osvatic, Jay;  Woodcroft, Ben J;  Rattei, Thomas;  Wagner, Michael<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2455','tp_links')\" style=\"cursor:pointer;\">GlobDB: a comprehensive species-dereplicated microbial genome resource<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Bioinfo Adv, <\/span><span class=\"tp_pub_additional_volume\">vol. 5, <\/span><span class=\"tp_pub_additional_number\">no. 1, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2635-0041<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2455\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2455','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2455\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2455','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2455\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Speth2024,<br \/>\r\ntitle = {GlobDB: a comprehensive species-dereplicated microbial genome resource},<br \/>\r\nauthor = {Daan R Speth and Nick Pullen and Samuel T N Aroney and Benjamin L Coltman and Jay Osvatic and Ben J Woodcroft and Thomas Rattei and Michael Wagner},<br \/>\r\neditor = {Nicola Mulder},<br \/>\r\ndoi = {10.1093\/bioadv\/vbaf280},<br \/>\r\nissn = {2635-0041},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-11-09},<br \/>\r\nurldate = {2025-11-09},<br \/>\r\njournal = {Bioinfo Adv},<br \/>\r\nvolume = {5},<br \/>\r\nnumber = {1},<br \/>\r\npublisher = {Oxford University Press (OUP)},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:sec&gt;<br \/>\r\n                    &lt;jats:title&gt;Motivation&lt;\/jats:title&gt;<br \/>\r\n                    &lt;jats:p&gt;Over the past years, substantial numbers of microbial species\u2019 genomes have been deposited outside of conventional INSDC databases.&lt;\/jats:p&gt;<br \/>\r\n                  &lt;\/jats:sec&gt;<br \/>\r\n                  &lt;jats:sec&gt;<br \/>\r\n                    &lt;jats:title&gt;Results&lt;\/jats:title&gt;<br \/>\r\n                    &lt;jats:p&gt;The GlobDB aggregates 14 independent genomic catalogues to provide a comprehensive database of species-dereplicated microbial genomes, with consistent taxonomy, annotations, and additional analysis resources. The GlobDB more than doubles the number of microbial species represented by genomes relative to the field standard genome taxonomy database.&lt;\/jats:p&gt;<br \/>\r\n                  &lt;\/jats:sec&gt;<br \/>\r\n                  &lt;jats:sec&gt;<br \/>\r\n                    &lt;jats:title&gt;Availability and implementation&lt;\/jats:title&gt;<br \/>\r\n                    &lt;jats:p&gt;The GlobDB is available at https:\/\/globdb.org\/.&lt;\/jats:p&gt;<br \/>\r\n                  &lt;\/jats:sec&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2455','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2455\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt;<br \/>\r\n                  &lt;jats:sec&gt;<br \/>\r\n                    &lt;jats:title&gt;Motivation&lt;\/jats:title&gt;<br \/>\r\n                    &lt;jats:p&gt;Over the past years, substantial numbers of microbial species\u2019 genomes have been deposited outside of conventional INSDC databases.&lt;\/jats:p&gt;<br \/>\r\n                  &lt;\/jats:sec&gt;<br \/>\r\n                  &lt;jats:sec&gt;<br \/>\r\n                    &lt;jats:title&gt;Results&lt;\/jats:title&gt;<br \/>\r\n                    &lt;jats:p&gt;The GlobDB aggregates 14 independent genomic catalogues to provide a comprehensive database of species-dereplicated microbial genomes, with consistent taxonomy, annotations, and additional analysis resources. The GlobDB more than doubles the number of microbial species represented by genomes relative to the field standard genome taxonomy database.&lt;\/jats:p&gt;<br \/>\r\n                  &lt;\/jats:sec&gt;<br \/>\r\n                  &lt;jats:sec&gt;<br \/>\r\n                    &lt;jats:title&gt;Availability and implementation&lt;\/jats:title&gt;<br \/>\r\n                    &lt;jats:p&gt;The GlobDB is available at https:\/\/globdb.org\/.&lt;\/jats:p&gt;<br \/>\r\n                  &lt;\/jats:sec&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2455','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2455\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1093\/bioadv\/vbaf280\" title=\"Follow DOI:10.1093\/bioadv\/vbaf280\" target=\"_blank\">doi:10.1093\/bioadv\/vbaf280<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2455','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">19.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Holub, Elisabeth;  Hondl, Nikolaus;  W\u00f6hrer, Sebastian;  Lendl, Bernhard;  Ramer, Georg<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2479','tp_links')\" style=\"cursor:pointer;\">Not Just Better Resolution: A Detailed Study of the Signal Distribution in Mid-Infrared Optical Photothermal Imaging<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Anal. Chem., <\/span><span class=\"tp_pub_additional_volume\">vol. 97, <\/span><span class=\"tp_pub_additional_number\">no. 39, <\/span><span class=\"tp_pub_additional_pages\">pp. 21418\u201321427, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1520-6882<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2479\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2479','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2479\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Holub2025,<br \/>\r\ntitle = {Not Just Better Resolution: A Detailed Study of the Signal Distribution in Mid-Infrared Optical Photothermal Imaging},<br \/>\r\nauthor = {Elisabeth Holub and Nikolaus Hondl and Sebastian W\u00f6hrer and Bernhard Lendl and Georg Ramer},<br \/>\r\ndoi = {10.1021\/acs.analchem.5c03194},<br \/>\r\nissn = {1520-6882},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-10-07},<br \/>\r\nurldate = {2025-10-07},<br \/>\r\njournal = {Anal. Chem.},<br \/>\r\nvolume = {97},<br \/>\r\nnumber = {39},<br \/>\r\npages = {21418--21427},<br \/>\r\npublisher = {American Chemical Society (ACS)},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2479','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2479\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1021\/acs.analchem.5c03194\" title=\"Follow DOI:10.1021\/acs.analchem.5c03194\" target=\"_blank\">doi:10.1021\/acs.analchem.5c03194<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2479','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">20.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Bayer, Barbara;  Kitzinger, Katharina;  Paul, Nicola L.;  Albers, Justine B.;  Saito, Mak A.;  Wagner, Michael;  Carlson, Craig A.;  Santoro, Alyson E.<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2440','tp_links')\" style=\"cursor:pointer;\">Minor contribution of ammonia oxidizers to inorganic carbon fixation in the ocean<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nat. Geosci., <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1752-0908<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2440\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2440','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2440\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2440','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2440\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Bayer2025,<br \/>\r\ntitle = {Minor contribution of ammonia oxidizers to inorganic carbon fixation in the ocean},<br \/>\r\nauthor = {Barbara Bayer and Katharina Kitzinger and Nicola L. Paul and Justine B. Albers and Mak A. Saito and Michael Wagner and Craig A. Carlson and Alyson E. Santoro},<br \/>\r\ndoi = {10.1038\/s41561-025-01798-x},<br \/>\r\nissn = {1752-0908},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-09-23},<br \/>\r\njournal = {Nat. Geosci.},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {<jats:title>Abstract<\/jats:title><br \/>\n          <jats:p>Ammonia-oxidizing archaea are the most abundant chemolithoautotrophs in the ocean and are assumed to dominate carbon fixation below the sunlit surface layer. However, the supply of reduced nitrogen delivered from the surface in sinking particulate organic matter is insufficient to support the amount of nitrification required to sustain measured carbon fixation rates in the dark ocean. Here we attempt to reconcile this observed discrepancy by quantifying the contribution of ammonia oxidizers to dark carbon fixation in the eastern tropical and subtropical Pacific Ocean. We used phenylacetylene\u2014a specific inhibitor of the ammonia monooxygenase enzyme\u2014to selectively inhibit ammonia oxidizers in samples collected throughout the water column (60\u2013600\u2009m depth). We show that, despite their high abundances, ammonia oxidizers contribute only a small fraction to dark carbon fixation, accounting for 4\u201325% of the total depth-integrated rates in the eastern tropical Pacific. The highest contributions were observed within the upper mesopelagic zone (120\u2013175\u2009m depth), where ammonia oxidation could account for ~50% of dark carbon fixation at some stations. Our results challenge the current view that carbon fixation in the dark ocean is primarily sustained by nitrification and suggest that other microbial metabolisms, including heterotrophy, might play a larger role than previously assumed.<\/jats:p>},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2440','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2440\" style=\"display:none;\"><div class=\"tp_abstract_entry\"><jats:title>Abstract<\/jats:title><br \/>\n          <jats:p>Ammonia-oxidizing archaea are the most abundant chemolithoautotrophs in the ocean and are assumed to dominate carbon fixation below the sunlit surface layer. However, the supply of reduced nitrogen delivered from the surface in sinking particulate organic matter is insufficient to support the amount of nitrification required to sustain measured carbon fixation rates in the dark ocean. Here we attempt to reconcile this observed discrepancy by quantifying the contribution of ammonia oxidizers to dark carbon fixation in the eastern tropical and subtropical Pacific Ocean. We used phenylacetylene\u2014a specific inhibitor of the ammonia monooxygenase enzyme\u2014to selectively inhibit ammonia oxidizers in samples collected throughout the water column (60\u2013600\u2009m depth). We show that, despite their high abundances, ammonia oxidizers contribute only a small fraction to dark carbon fixation, accounting for 4\u201325% of the total depth-integrated rates in the eastern tropical Pacific. The highest contributions were observed within the upper mesopelagic zone (120\u2013175\u2009m depth), where ammonia oxidation could account for ~50% of dark carbon fixation at some stations. Our results challenge the current view that carbon fixation in the dark ocean is primarily sustained by nitrification and suggest that other microbial metabolisms, including heterotrophy, might play a larger role than previously assumed.<\/jats:p><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2440','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2440\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s41561-025-01798-x\" title=\"Follow DOI:10.1038\/s41561-025-01798-x\" target=\"_blank\">doi:10.1038\/s41561-025-01798-x<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2440','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">21.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Kaiser, Christina;  Anthony, Mark A.<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2437','tp_links')\" style=\"cursor:pointer;\">The role of ectomycorrhizal functional diversity in mediating soil carbon cycling under global change<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">New Phytologist, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1469-8137<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2437\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2437','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2437\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Kaiser2025,<br \/>\r\ntitle = {The role of ectomycorrhizal functional diversity in mediating soil carbon cycling under global change},<br \/>\r\nauthor = {Christina Kaiser and Mark A. Anthony},<br \/>\r\ndoi = {10.1111\/nph.70559},<br \/>\r\nissn = {1469-8137},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-09-08},<br \/>\r\njournal = {New Phytologist},<br \/>\r\npublisher = {Wiley},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2437','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2437\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1111\/nph.70559\" title=\"Follow DOI:10.1111\/nph.70559\" target=\"_blank\">doi:10.1111\/nph.70559<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2437','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">22.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Sherman, Anya;  H\u00e4mmerle, Luzian Elijah;  Mordechay, Evyatar Ben;  Chefetz, Benny;  Hofmann, Thilo<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2422','tp_links')\" style=\"cursor:pointer;\">Uptake of tire-wear derived compounds by lettuce grown in three soils<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Environment International, <\/span><span class=\"tp_pub_additional_volume\">vol. 203, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 0160-4120<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2422\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2422','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2422\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Sherman2025b,<br \/>\r\ntitle = {Uptake of tire-wear derived compounds by lettuce grown in three soils},<br \/>\r\nauthor = {Anya Sherman and Luzian Elijah H\u00e4mmerle and Evyatar Ben Mordechay and Benny Chefetz and Thilo Hofmann},<br \/>\r\ndoi = {10.1016\/j.envint.2025.109742},<br \/>\r\nissn = {0160-4120},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-09-00},<br \/>\r\njournal = {Environment International},<br \/>\r\nvolume = {203},<br \/>\r\npublisher = {Elsevier BV},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2422','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2422\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1016\/j.envint.2025.109742\" title=\"Follow DOI:10.1016\/j.envint.2025.109742\" target=\"_blank\">doi:10.1016\/j.envint.2025.109742<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2422','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">23.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Chen, Song-Can;  Li, Xiao-Min;  Battisti, Nicola;  Guan, Guoqing;  Montoya, Maria A.;  Osvatic, Jay;  Pjevac, Petra;  Pollak, Shaul;  Richter, Andreas;  Schintlmeister, Arno;  Wanek, Wolfgang;  Mussmann, Marc;  Loy, Alexander<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2419','tp_links')\" style=\"cursor:pointer;\">Microbial iron oxide respiration coupled to sulfide oxidation<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nature, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1476-4687<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2419\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2419','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2419\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2419','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2419\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Chen2025,<br \/>\r\ntitle = {Microbial iron oxide respiration coupled to sulfide oxidation},<br \/>\r\nauthor = {Song-Can Chen and Xiao-Min Li and Nicola Battisti and Guoqing Guan and Maria A. Montoya and Jay Osvatic and Petra Pjevac and Shaul Pollak and Andreas Richter and Arno Schintlmeister and Wolfgang Wanek and Marc Mussmann and Alexander Loy},<br \/>\r\ndoi = {10.1038\/s41586-025-09467-0},<br \/>\r\nissn = {1476-4687},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-08-27},<br \/>\r\njournal = {Nature},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {<jats:title>Abstract<\/jats:title><br \/>\n          <jats:p>Microorganisms have driven Earth\u2019s sulfur cycle since the emergence of life<jats:sup>1\u20136<\/jats:sup>, yet the sulfur-cycling capacities of microorganisms and their integration with other element cycles remain incompletely understood. One such uncharacterized metabolism is the coupling of sulfide oxidation with iron(<jats:sc>iii<\/jats:sc>) oxide reduction, a ubiquitous environmental process hitherto considered to be strictly abiotic<jats:sup>7,8<\/jats:sup>. Here we present a comprehensive genomic analysis of sulfur metabolism across prokaryotes, and reveal bacteria that are capable of oxidizing sulfide using extracellular solid phase iron(<jats:sc>iii<\/jats:sc>). Based on a phylogenetic framework of over hundred genes involved in dissimilatory transformation of sulfur compounds, we recorded sulfur-cycling capacity in most bacterial and archaeal phyla. Metabolic reconstructions predicted co-occurrence of sulfur compound oxidation and iron(<jats:sc>iii<\/jats:sc>) oxide respiration in diverse members of 37 prokaryotic phyla. Physiological and transcriptomic evidence demonstrated that a cultivated representative, <jats:italic>Desulfurivibrio alkaliphilus<\/jats:italic>, grows autotrophically by oxidizing dissolved sulfide or iron monosulfide (FeS) to sulfate with ferrihydrite as an extracellular iron(<jats:sc>iii<\/jats:sc>) electron acceptor. The biological process outpaced the abiotic process at environmentally relevant sulfide concentrations. These findings expand the known diversity of sulfur-cycling microorganisms and unveil a biological mechanism that links sulfur and iron cycling in anoxic environments, thus highlighting the fundamental role of microorganisms in global element cycles.<\/jats:p>},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2419','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2419\" style=\"display:none;\"><div class=\"tp_abstract_entry\"><jats:title>Abstract<\/jats:title><br \/>\n          <jats:p>Microorganisms have driven Earth\u2019s sulfur cycle since the emergence of life<jats:sup>1\u20136<\/jats:sup>, yet the sulfur-cycling capacities of microorganisms and their integration with other element cycles remain incompletely understood. One such uncharacterized metabolism is the coupling of sulfide oxidation with iron(<jats:sc>iii<\/jats:sc>) oxide reduction, a ubiquitous environmental process hitherto considered to be strictly abiotic<jats:sup>7,8<\/jats:sup>. Here we present a comprehensive genomic analysis of sulfur metabolism across prokaryotes, and reveal bacteria that are capable of oxidizing sulfide using extracellular solid phase iron(<jats:sc>iii<\/jats:sc>). Based on a phylogenetic framework of over hundred genes involved in dissimilatory transformation of sulfur compounds, we recorded sulfur-cycling capacity in most bacterial and archaeal phyla. Metabolic reconstructions predicted co-occurrence of sulfur compound oxidation and iron(<jats:sc>iii<\/jats:sc>) oxide respiration in diverse members of 37 prokaryotic phyla. Physiological and transcriptomic evidence demonstrated that a cultivated representative, <jats:italic>Desulfurivibrio alkaliphilus<\/jats:italic>, grows autotrophically by oxidizing dissolved sulfide or iron monosulfide (FeS) to sulfate with ferrihydrite as an extracellular iron(<jats:sc>iii<\/jats:sc>) electron acceptor. The biological process outpaced the abiotic process at environmentally relevant sulfide concentrations. These findings expand the known diversity of sulfur-cycling microorganisms and unveil a biological mechanism that links sulfur and iron cycling in anoxic environments, thus highlighting the fundamental role of microorganisms in global element cycles.<\/jats:p><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2419','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2419\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s41586-025-09467-0\" title=\"Follow DOI:10.1038\/s41586-025-09467-0\" target=\"_blank\">doi:10.1038\/s41586-025-09467-0<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2419','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">24.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Rasoulimehrabani, Hamid;  Khadem, Sanaz;  Hod\u017ei\u0107, Adnan;  Philipp, Miriam;  Gallo, Rebecca;  Nikolov, Georgi;  S\u00e9neca, Joana;  Ramesmayer, Julia;  Sivuli\u010d, Patrik;  Berry, David<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2428','tp_links')\" style=\"cursor:pointer;\">Evaluating the prebiotic activity of arabinogalactan on the human gut microbiota using 16S rRNA gene sequencing and Raman-activated cell sorting<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Microbiome Res Rep., <\/span><span class=\"tp_pub_additional_volume\">vol. 4, <\/span><span class=\"tp_pub_additional_number\">no. 3, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2771-5965<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_2428\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2428','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_2428\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2428','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2428\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Rasoulimehrabani2025,<br \/>\r\ntitle = {Evaluating the prebiotic activity of arabinogalactan on the human gut microbiota using 16S rRNA gene sequencing and Raman-activated cell sorting},<br \/>\r\nauthor = {Hamid Rasoulimehrabani and Sanaz Khadem and Adnan Hod\u017ei\u0107 and Miriam Philipp and Rebecca Gallo and Georgi Nikolov and Joana S\u00e9neca and Julia Ramesmayer and Patrik Sivuli\u010d and David Berry},<br \/>\r\ndoi = {10.20517\/mrr.2025.29},<br \/>\r\nissn = {2771-5965},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-08-14},<br \/>\r\njournal = {Microbiome Res Rep.},<br \/>\r\nvolume = {4},<br \/>\r\nnumber = {3},<br \/>\r\npublisher = {OAE Publishing Inc.},<br \/>\r\nabstract = {<jats:p><br \/>\n          Background: Arabinogalactan is a complex plant-derived polysaccharide proposed to function as a selective prebiotic, yet the microbial taxa directly involved in its metabolism and the cooperative dynamics within the gut microbiota remain incompletely defined.<\/jats:p><br \/>\n          <jats:p><br \/>\n          Methods: Here, we combined community-level sequencing with targeted single-cell activity profiling to investigate how arabinogalactan shapes gut microbial composition and function. Fecal samples from ten healthy individuals were incubated ex vivo with arabinogalactan, and microbial responses were assessed using 16S rRNA gene amplicon sequencing alongside Raman-activated cell sorting (RACS) and coculture experiments.<\/jats:p><br \/>\n          <jats:p><br \/>\n          Results: Arabinogalactan consistently enriched Bifidobacterium and Gemmiger across donors, with Bifidobacterium also responding to galactose and Gemmiger and Blautia stimulated by arabinose, the two monosaccharide components of arabinogalactan. RACS enabled the selective isolation of metabolically active arabinogalactan responders, including Bifidobacterium longum (B. longum) and Faecalibacterium prausnitzii, along with other strains from the phyla Actinomycetota, Bacteroidota, and Bacillota. Notably, coculture experiments revealed that B. longum not only degraded arabinogalactan efficiently but also supported the growth of non-degrading species via metabolic cross-feeding. These cooperative interactions highlight B. longum as a keystone species in arabinogalactan utilization and suggest broader community-level benefits from its activity.<\/jats:p><br \/>\n          <jats:p><br \/>\n          Conclusion: Together, our findings demonstrate arabinogalactan\u2019s bifidogenic effect and its potential to promote functionally important microbes within the gut ecosystem. This study also highlights the utility of RACS for linking microbial identity to function, enabling the targeted recovery of active strains from complex communities.<\/jats:p>},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2428','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_2428\" style=\"display:none;\"><div class=\"tp_abstract_entry\"><jats:p><br \/>\n          Background: Arabinogalactan is a complex plant-derived polysaccharide proposed to function as a selective prebiotic, yet the microbial taxa directly involved in its metabolism and the cooperative dynamics within the gut microbiota remain incompletely defined.<\/jats:p><br \/>\n          <jats:p><br \/>\n          Methods: Here, we combined community-level sequencing with targeted single-cell activity profiling to investigate how arabinogalactan shapes gut microbial composition and function. Fecal samples from ten healthy individuals were incubated ex vivo with arabinogalactan, and microbial responses were assessed using 16S rRNA gene amplicon sequencing alongside Raman-activated cell sorting (RACS) and coculture experiments.<\/jats:p><br \/>\n          <jats:p><br \/>\n          Results: Arabinogalactan consistently enriched Bifidobacterium and Gemmiger across donors, with Bifidobacterium also responding to galactose and Gemmiger and Blautia stimulated by arabinose, the two monosaccharide components of arabinogalactan. RACS enabled the selective isolation of metabolically active arabinogalactan responders, including Bifidobacterium longum (B. longum) and Faecalibacterium prausnitzii, along with other strains from the phyla Actinomycetota, Bacteroidota, and Bacillota. Notably, coculture experiments revealed that B. longum not only degraded arabinogalactan efficiently but also supported the growth of non-degrading species via metabolic cross-feeding. These cooperative interactions highlight B. longum as a keystone species in arabinogalactan utilization and suggest broader community-level benefits from its activity.<\/jats:p><br \/>\n          <jats:p><br \/>\n          Conclusion: Together, our findings demonstrate arabinogalactan\u2019s bifidogenic effect and its potential to promote functionally important microbes within the gut ecosystem. This study also highlights the utility of RACS for linking microbial identity to function, enabling the targeted recovery of active strains from complex communities.<\/jats:p><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2428','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2428\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.20517\/mrr.2025.29\" title=\"Follow DOI:10.20517\/mrr.2025.29\" target=\"_blank\">doi:10.20517\/mrr.2025.29<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2428','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">25.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Bale, Nicole J.;  Fujimura, Hayato;  Pjevac, Petra;  Koenen, Michel;  Ikeda, Hikaru;  Itagaki, Satohiro;  Yamamoto, Yojiro;  Palmetzhofer, Johanna;  Sedlacek, Christopher J.;  Palabikyan, Hayk;  Damst\u00e9, Jaap S. Sinninghe;  Wagner, Michael;  Shiigi, Hiroshi;  Daims, Holger<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('19','tp_links')\" style=\"cursor:pointer;\">Unusual Plastoquinones in Non\u2010Phototrophic Nitrifying Bacteria<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Environ Microbiol Rep, <\/span><span class=\"tp_pub_additional_volume\">vol. 17, <\/span><span class=\"tp_pub_additional_number\">no. 4, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1758-2229<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_19\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('19','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_19\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('19','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_19\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Bale2025,<br \/>\r\ntitle = {Unusual Plastoquinones in Non\u2010Phototrophic Nitrifying Bacteria},<br \/>\r\nauthor = {Nicole J. Bale and Hayato Fujimura and Petra Pjevac and Michel Koenen and Hikaru Ikeda and Satohiro Itagaki and Yojiro Yamamoto and Johanna Palmetzhofer and Christopher J. Sedlacek and Hayk Palabikyan and Jaap S. Sinninghe Damst\u00e9 and Michael Wagner and Hiroshi Shiigi and Holger Daims},<br \/>\r\ndoi = {10.1111\/1758-2229.70174},<br \/>\r\nissn = {1758-2229},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-08-05},<br \/>\r\nurldate = {2025-08-00},<br \/>\r\njournal = {Environ Microbiol Rep},<br \/>\r\nvolume = {17},<br \/>\r\nnumber = {4},<br \/>\r\npublisher = {Wiley},<br \/>\r\nabstract = {&lt;jats:title&gt;ABSTRACT&lt;\/jats:title&gt;&lt;jats:p&gt;Isoprenoid quinones are important compounds in most organisms. They are essential in electron and proton transport in respiratory and photosynthetic electron transport chains, and additional functions include oxidative stress defence. The biologically most relevant quinones are naphthoquinones including menaquinone and benzoquinones including ubiquinone and plastoquinone. They differ in their polar headgroup structures, physicochemical properties, and distribution among organisms. Menaquinone is the most widespread quinone in prokaryotes, ubiquinone occurs only in bacteria of the phylum &lt;jats:italic&gt;Pseudomonadota&lt;\/jats:italic&gt; and eukaryotes, and plastoquinone exists in phototrophic &lt;jats:italic&gt;Cyanobacteria&lt;\/jats:italic&gt; and plants. We found that chemolithoautotrophic nitrifying bacteria of the genus &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt; (phylum &lt;jats:italic&gt;Nitrospirota&lt;\/jats:italic&gt;) exclusively possess unusual methyl\u2010plastoquinones with a standard redox potential below that of canonical plastoquinone and ubiquinone but above menaquinone, suggesting functional roles in reverse electron transport, ammonia oxidation, alternative energy metabolisms, and oxidative stress mitigation. This extends the known diversity of quinones and suggests that plastoquinone derivatives are essential in ecologically important, non\u2010phototrophic bacteria.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('19','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_19\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;ABSTRACT&lt;\/jats:title&gt;&lt;jats:p&gt;Isoprenoid quinones are important compounds in most organisms. They are essential in electron and proton transport in respiratory and photosynthetic electron transport chains, and additional functions include oxidative stress defence. The biologically most relevant quinones are naphthoquinones including menaquinone and benzoquinones including ubiquinone and plastoquinone. They differ in their polar headgroup structures, physicochemical properties, and distribution among organisms. Menaquinone is the most widespread quinone in prokaryotes, ubiquinone occurs only in bacteria of the phylum &lt;jats:italic&gt;Pseudomonadota&lt;\/jats:italic&gt; and eukaryotes, and plastoquinone exists in phototrophic &lt;jats:italic&gt;Cyanobacteria&lt;\/jats:italic&gt; and plants. We found that chemolithoautotrophic nitrifying bacteria of the genus &lt;jats:italic&gt;Nitrospira&lt;\/jats:italic&gt; (phylum &lt;jats:italic&gt;Nitrospirota&lt;\/jats:italic&gt;) exclusively possess unusual methyl\u2010plastoquinones with a standard redox potential below that of canonical plastoquinone and ubiquinone but above menaquinone, suggesting functional roles in reverse electron transport, ammonia oxidation, alternative energy metabolisms, and oxidative stress mitigation. This extends the known diversity of quinones and suggests that plastoquinone derivatives are essential in ecologically important, non\u2010phototrophic bacteria.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('19','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_19\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1111\/1758-2229.70174\" title=\"Follow DOI:10.1111\/1758-2229.70174\" target=\"_blank\">doi:10.1111\/1758-2229.70174<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('19','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">26.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Kop, Linnea F M;  Koch, Hanna;  Speth, Daan;  L\u00fcke, Claudia;  Spieck, Eva;  Jetten, Mike S M;  Daims, Holger;  L\u00fccker, Sebastian<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('25','tp_links')\" style=\"cursor:pointer;\">Comparative genome analysis reveals broad phylogenetic and functional diversity within the order Nitrospirales<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">The ISME Journal, <\/span><span class=\"tp_pub_additional_volume\">vol. 19, <\/span><span class=\"tp_pub_additional_issue\">iss. 1, <\/span><span class=\"tp_pub_additional_pages\">pp. wraf151, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1751-7370<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_25\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('25','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_25\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('25','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_25\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{FMKop2025,<br \/>\r\ntitle = {Comparative genome analysis reveals broad phylogenetic and functional diversity within the order Nitrospirales},<br \/>\r\nauthor = {Linnea F M Kop and Hanna Koch and Daan Speth and Claudia L\u00fcke and Eva Spieck and Mike S M Jetten and Holger Daims and Sebastian L\u00fccker},<br \/>\r\ndoi = {10.1093\/ismejo\/wraf151},<br \/>\r\nissn = {1751-7370},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-07-24},<br \/>\r\nurldate = {2025-07-22},<br \/>\r\njournal = {The ISME Journal},<br \/>\r\nvolume = {19},<br \/>\r\nissue = {1},<br \/>\r\npages = {wraf151},<br \/>\r\npublisher = {Oxford University Press (OUP)},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Nitrification, a key process in the nitrogen cycle, involves the oxidation of ammonia to nitrite and nitrate by a diverse group of chemolithoautotrophic microorganisms. The order Nitrospirales (referred to in literature as the genus Nitrospira), which includes both nitrite-oxidizing and complete ammonia-oxidizing bacteria, plays a central role in this process. We sequenced the genomes of nine Nitrospirales members, incorporating genomes from previously unsequenced taxonomic Nitrospirales lineages. A comprehensive genomic analysis of these new Nitrospirales was conducted, which included an examination of their habitat distribution, phylogenetic diversity, and functional capabilities. This was complemented by the construction of and comparison to a database of 446 non-redundant, high-quality Nitrospirales genomes. Our phylogenomic analysis uncovered the presence of additional unclassified lineages and provided a comparison between genome-based and 16S rRNA gene-based taxonomies. Whereas some Nitrospirales lineages seem to exhibit habitat preferences, others are found across a wide variety of ecosystems, suggesting a broad niche spectrum. This capacity to adapt to different environmental conditions is also reflected in the high variability and modularity of the respiratory chain and nitrogen assimilation mechanisms. Additionally, we found evidence of quorum sensing systems in species beyond lineage II, implying a broader ecological role for this communication mechanism within the Nitrospirales. Finally, we identified a set of conserved genes unique to nitrite oxidoreductase-containing Nitrospirales, providing insights into the emergence of this functional group. In conclusion, our study emphasizes the adaptability of the various nitrifying classes of the order Nitrospirales to diverse environments and reveals the presence of new taxonomic lineages.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('25','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_25\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&amp;lt;jats:title&amp;gt;Abstract&amp;lt;\/jats:title&amp;gt; <br \/>\r\n &amp;lt;jats:p&amp;gt;Nitrification, a key process in the nitrogen cycle, involves the oxidation of ammonia to nitrite and nitrate by a diverse group of chemolithoautotrophic microorganisms. The order Nitrospirales (referred to in literature as the genus Nitrospira), which includes both nitrite-oxidizing and complete ammonia-oxidizing bacteria, plays a central role in this process. We sequenced the genomes of nine Nitrospirales members, incorporating genomes from previously unsequenced taxonomic Nitrospirales lineages. A comprehensive genomic analysis of these new Nitrospirales was conducted, which included an examination of their habitat distribution, phylogenetic diversity, and functional capabilities. This was complemented by the construction of and comparison to a database of 446 non-redundant, high-quality Nitrospirales genomes. Our phylogenomic analysis uncovered the presence of additional unclassified lineages and provided a comparison between genome-based and 16S rRNA gene-based taxonomies. Whereas some Nitrospirales lineages seem to exhibit habitat preferences, others are found across a wide variety of ecosystems, suggesting a broad niche spectrum. This capacity to adapt to different environmental conditions is also reflected in the high variability and modularity of the respiratory chain and nitrogen assimilation mechanisms. Additionally, we found evidence of quorum sensing systems in species beyond lineage II, implying a broader ecological role for this communication mechanism within the Nitrospirales. Finally, we identified a set of conserved genes unique to nitrite oxidoreductase-containing Nitrospirales, providing insights into the emergence of this functional group. In conclusion, our study emphasizes the adaptability of the various nitrifying classes of the order Nitrospirales to diverse environments and reveals the presence of new taxonomic lineages.&amp;lt;\/jats:p&amp;gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('25','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_25\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1093\/ismejo\/wraf151\" title=\"Follow DOI:10.1093\/ismejo\/wraf151\" target=\"_blank\">doi:10.1093\/ismejo\/wraf151<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('25','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">27.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Becher, Clarissa;  Frauenlob, Martin;  Selinger, Florian;  Ertl, Peter;  Goumans, Marie-Jos\u00e9;  Sanchez-Duffhues, Gonzalo<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('43','tp_links')\" style=\"cursor:pointer;\">A cost-effective vessel-on-a-chip for high shear stress applications in vascular biology<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Microvascular Research, <\/span><span class=\"tp_pub_additional_volume\">vol. 160, <\/span><span class=\"tp_pub_additional_pages\">pp. 104814, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 0026-2862<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_43\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('43','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_43\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Becher2025,<br \/>\r\ntitle = {A cost-effective vessel-on-a-chip for high shear stress applications in vascular biology},<br \/>\r\nauthor = {Clarissa Becher and Martin Frauenlob and Florian Selinger and Peter Ertl and Marie-Jos\u00e9 Goumans and Gonzalo Sanchez-Duffhues},<br \/>\r\ndoi = {10.1016\/j.mvr.2025.104814},<br \/>\r\nissn = {0026-2862},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-07-01},<br \/>\r\nurldate = {2025-05-00},<br \/>\r\njournal = {Microvascular Research},<br \/>\r\nvolume = {160},<br \/>\r\npages = {104814},<br \/>\r\npublisher = {Elsevier BV},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('43','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_43\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1016\/j.mvr.2025.104814\" title=\"Follow DOI:10.1016\/j.mvr.2025.104814\" target=\"_blank\">doi:10.1016\/j.mvr.2025.104814<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('43','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">28.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Breyer, Eva;  Stix, Constanze;  Kilker, Sophie;  Roller, Benjamin R. K.;  Panagou, Fragkiski;  Doebke, Charlotte;  Amano, Chie;  Saavedra, Daniel E. M.;  Coll-Garc\u00eda, Guillem;  Steger-M\u00e4hnert, Barbara;  Dachs, Jordi;  Berrojalbiz, Naiara;  Vila-Costa, Maria;  Sobrino, Cristina;  Fuentes-Lema, Antonio;  Berthiller, Franz;  Polz, Martin F.;  Baltar, Federico<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('31','tp_links')\" style=\"cursor:pointer;\">The contribution of pelagic fungi to ocean biomass<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Cell, <\/span><span class=\"tp_pub_additional_volume\">vol. 188, <\/span><span class=\"tp_pub_additional_number\">no. 15, <\/span><span class=\"tp_pub_additional_pages\">pp. 3992\u20134002.e13, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 0092-8674<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_31\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('31','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_31\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Breyer2025,<br \/>\r\ntitle = {The contribution of pelagic fungi to ocean biomass},<br \/>\r\nauthor = {Eva Breyer and Constanze Stix and Sophie Kilker and Benjamin R. K. Roller and Fragkiski Panagou and Charlotte Doebke and Chie Amano and Daniel E. M. Saavedra and Guillem Coll-Garc\u00eda and Barbara Steger-M\u00e4hnert and Jordi Dachs and Naiara Berrojalbiz and Maria Vila-Costa and Cristina Sobrino and Antonio Fuentes-Lema and Franz Berthiller and Martin F. Polz and Federico Baltar},<br \/>\r\ndoi = {10.1016\/j.cell.2025.05.004},<br \/>\r\nissn = {0092-8674},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-07-00},<br \/>\r\njournal = {Cell},<br \/>\r\nvolume = {188},<br \/>\r\nnumber = {15},<br \/>\r\npages = {3992\u20134002.e13},<br \/>\r\npublisher = {Elsevier BV},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('31','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_31\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1016\/j.cell.2025.05.004\" title=\"Follow DOI:10.1016\/j.cell.2025.05.004\" target=\"_blank\">doi:10.1016\/j.cell.2025.05.004<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('31','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">29.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Xu, Shengkai;  Zhu, Meiling;  Fan, Lihua;  Yao, Yao;  Cao, Tianchi;  Ji, Rong;  Hofmann, Thilo;  Zhang, Tong;  Chen, Wei<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('2443','tp_links')\" style=\"cursor:pointer;\">Eco-Corona Formation Enhances Cotransport of Nanoplastics and Organic Contaminants in Porous Media<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Environ. Sci. Technol., <\/span><span class=\"tp_pub_additional_volume\">vol. 59, <\/span><span class=\"tp_pub_additional_number\">no. 25, <\/span><span class=\"tp_pub_additional_pages\">pp. 12978\u201312989, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1520-5851<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_2443\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('2443','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_2443\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Xu2025,<br \/>\r\ntitle = {Eco-Corona Formation Enhances Cotransport of Nanoplastics and Organic Contaminants in Porous Media},<br \/>\r\nauthor = {Shengkai Xu and Meiling Zhu and Lihua Fan and Yao Yao and Tianchi Cao and Rong Ji and Thilo Hofmann and Tong Zhang and Wei Chen},<br \/>\r\ndoi = {10.1021\/acs.est.5c02378},<br \/>\r\nissn = {1520-5851},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-06-15},<br \/>\r\nurldate = {2025-07-01},<br \/>\r\njournal = {Environ. Sci. Technol.},<br \/>\r\nvolume = {59},<br \/>\r\nnumber = {25},<br \/>\r\npages = {12978--12989},<br \/>\r\npublisher = {American Chemical Society (ACS)},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2443','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_2443\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1021\/acs.est.5c02378\" title=\"Follow DOI:10.1021\/acs.est.5c02378\" target=\"_blank\">doi:10.1021\/acs.est.5c02378<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('2443','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">30.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Tomin, Tamara;  Honeder, Sophie Elisabeth;  Liesinger, Laura;  Gremel, Daniela;  Retzl, Bernhard;  Lindenmann, Joerg;  Brcic, Luka;  Schittmayer, Matthias;  Birner-Gruenberger, Ruth<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('13','tp_links')\" style=\"cursor:pointer;\">Increased antioxidative defense and reduced advanced glycation end-product formation by metabolic adaptation in non-small-cell-lung-cancer patients<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nat Commun, <\/span><span class=\"tp_pub_additional_volume\">vol. 16, <\/span><span class=\"tp_pub_additional_number\">no. 1, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2041-1723<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_13\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('13','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_13\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('13','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_13\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Tomin2025,<br \/>\r\ntitle = {Increased antioxidative defense and reduced advanced glycation end-product formation by metabolic adaptation in non-small-cell-lung-cancer patients},<br \/>\r\nauthor = {Tamara Tomin and Sophie Elisabeth Honeder and Laura Liesinger and Daniela Gremel and Bernhard Retzl and Joerg Lindenmann and Luka Brcic and Matthias Schittmayer and Ruth Birner-Gruenberger},<br \/>\r\ndoi = {10.1038\/s41467-025-60326-y},<br \/>\r\nissn = {2041-1723},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-06-03},<br \/>\r\nurldate = {2025-12-00},<br \/>\r\njournal = {Nat Commun},<br \/>\r\nvolume = {16},<br \/>\r\nnumber = {1},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Reactive oxygen species can oxidatively modify enzymes to reroute metabolism according to tumor needs, rendering identification of oxidized proteins important for understanding neoplastic survival mechanisms. Thiol groups are most susceptible to oxidative modifications but challenging to analyze in clinical settings. We here describe the\u00a0protein and small-molecular thiol oxidation landscape of 70 human lung tumors (and their paired healthy counter parts) and demonstrate that cancer adapts metabolism to increase glutathione synthesis to counteract oxidative stress. Glyoxalases, the key enzymes in the detoxification of methylglyoxal, a byproduct of glycolysis and precursor of advanced glycation end-products, are compromised by oxidation and downregulation. Despite decreased methylglyoxal detoxification capacity, cancers do not accumulate advanced glycation end-products. Since in vitro downregulation or inhibition of GAPDH upregulates glyoxalases, we propose that tumors reduce methylglyoxal by activating GAPDH.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('13','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_13\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Reactive oxygen species can oxidatively modify enzymes to reroute metabolism according to tumor needs, rendering identification of oxidized proteins important for understanding neoplastic survival mechanisms. Thiol groups are most susceptible to oxidative modifications but challenging to analyze in clinical settings. We here describe the\u00a0protein and small-molecular thiol oxidation landscape of 70 human lung tumors (and their paired healthy counter parts) and demonstrate that cancer adapts metabolism to increase glutathione synthesis to counteract oxidative stress. Glyoxalases, the key enzymes in the detoxification of methylglyoxal, a byproduct of glycolysis and precursor of advanced glycation end-products, are compromised by oxidation and downregulation. Despite decreased methylglyoxal detoxification capacity, cancers do not accumulate advanced glycation end-products. Since in vitro downregulation or inhibition of GAPDH upregulates glyoxalases, we propose that tumors reduce methylglyoxal by activating GAPDH.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('13','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_13\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s41467-025-60326-y\" title=\"Follow DOI:10.1038\/s41467-025-60326-y\" target=\"_blank\">doi:10.1038\/s41467-025-60326-y<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('13','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">31.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Gruseck, Richard;  Hofmann, Thilo;  Zumstein, Michael<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('37','tp_links')\" style=\"cursor:pointer;\">Flavonoid Stability and Biotransformation in Agricultural Soils: Effects of Hydroxylation, Methoxylation, and Glycosylation<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">J. Agric. Food Chem., <\/span><span class=\"tp_pub_additional_volume\">vol. 73, <\/span><span class=\"tp_pub_additional_number\">no. 23, <\/span><span class=\"tp_pub_additional_pages\">pp. 14245\u201314252, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1520-5118<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_37\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('37','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_37\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Gruseck2025,<br \/>\r\ntitle = {Flavonoid Stability and Biotransformation in Agricultural Soils: Effects of Hydroxylation, Methoxylation, and Glycosylation},<br \/>\r\nauthor = {Richard Gruseck and Thilo Hofmann and Michael Zumstein},<br \/>\r\ndoi = {10.1021\/acs.jafc.5c02814},<br \/>\r\nissn = {1520-5118},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-06-02},<br \/>\r\nurldate = {2025-06-11},<br \/>\r\njournal = {J. Agric. Food Chem.},<br \/>\r\nvolume = {73},<br \/>\r\nnumber = {23},<br \/>\r\npages = {14245\u201314252},<br \/>\r\npublisher = {American Chemical Society (ACS)},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('37','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_37\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1021\/acs.jafc.5c02814\" title=\"Follow DOI:10.1021\/acs.jafc.5c02814\" target=\"_blank\">doi:10.1021\/acs.jafc.5c02814<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('37','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">32.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> \u00d3dor, Gergely;  Karsai, M\u00e1rton<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('7','tp_links')\" style=\"cursor:pointer;\">Epidemic-induced local awareness behavior inferred from surveys and genetic sequence data<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nat Commun, <\/span><span class=\"tp_pub_additional_volume\">vol. 16, <\/span><span class=\"tp_pub_additional_number\">no. 1, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2041-1723<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_7\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('7','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_7\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('7','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_7\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{\u00d3dor2025,<br \/>\r\ntitle = {Epidemic-induced local awareness behavior inferred from surveys and genetic sequence data},<br \/>\r\nauthor = {Gergely \u00d3dor and M\u00e1rton Karsai},<br \/>\r\ndoi = {10.1038\/s41467-025-59508-5},<br \/>\r\nissn = {2041-1723},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-05-22},<br \/>\r\nurldate = {2025-12-00},<br \/>\r\njournal = {Nat Commun},<br \/>\r\nvolume = {16},<br \/>\r\nnumber = {1},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Behavior-disease models suggest that pandemics can be contained cost-effectively if individuals take preventive actions when disease prevalence rises among their close contacts. However, assessing local awareness behavior in real-world datasets remains a challenge. Through the analysis of mutation patterns in clinical genetic sequence data, we propose an efficient approach to quantify the impact of local awareness by identifying superspreading events and assigning containment scores to them. We validate the proposed containment score as a proxy for local awareness in simulation experiments, and find that it was correlated positively with policy stringency during the COVID-19 pandemic. Finally, we observe a temporary drop in the containment score during the Omicron wave in the United Kingdom, matching a survey experiment we carried out in Hungary during the corresponding period of the pandemic. Our findings bring important insight into the field of awareness modeling through the analysis of large-scale genetic sequence data, one of the most promising data sources in epidemics research.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('7','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_7\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Behavior-disease models suggest that pandemics can be contained cost-effectively if individuals take preventive actions when disease prevalence rises among their close contacts. However, assessing local awareness behavior in real-world datasets remains a challenge. Through the analysis of mutation patterns in clinical genetic sequence data, we propose an efficient approach to quantify the impact of local awareness by identifying superspreading events and assigning containment scores to them. We validate the proposed containment score as a proxy for local awareness in simulation experiments, and find that it was correlated positively with policy stringency during the COVID-19 pandemic. Finally, we observe a temporary drop in the containment score during the Omicron wave in the United Kingdom, matching a survey experiment we carried out in Hungary during the corresponding period of the pandemic. Our findings bring important insight into the field of awareness modeling through the analysis of large-scale genetic sequence data, one of the most promising data sources in epidemics research.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('7','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_7\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s41467-025-59508-5\" title=\"Follow DOI:10.1038\/s41467-025-59508-5\" target=\"_blank\">doi:10.1038\/s41467-025-59508-5<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('7','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">33.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Sherman, Anya;  Masset, Thibault;  Wimmer, Lukas;  Maruschka, Leah K.;  Dailey, Lea Ann;  H\u00fcffer, Thorsten;  Breider, Florian;  Hofmann, Thilo<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('49','tp_links')\" style=\"cursor:pointer;\">The Invisible Footprint of Climbing Shoes: High Exposure to Rubber Additives in Indoor Facilities<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">ACS EST Air, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2837-1402<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_49\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('49','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_49\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Sherman2025,<br \/>\r\ntitle = {The Invisible Footprint of Climbing Shoes: High Exposure to Rubber Additives in Indoor Facilities},<br \/>\r\nauthor = {Anya Sherman and Thibault Masset and Lukas Wimmer and Leah K. Maruschka and Lea Ann Dailey and Thorsten H\u00fcffer and Florian Breider and Thilo Hofmann},<br \/>\r\ndoi = {10.1021\/acsestair.5c00017},<br \/>\r\nissn = {2837-1402},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-04-24},<br \/>\r\njournal = {ACS EST Air},<br \/>\r\npublisher = {American Chemical Society (ACS)},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('49','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_49\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1021\/acsestair.5c00017\" title=\"Follow DOI:10.1021\/acsestair.5c00017\" target=\"_blank\">doi:10.1021\/acsestair.5c00017<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('49','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">34.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Krammer, Leo;  Darnhofer, Barbara;  Kljajic, Marko;  Liesinger, Laura;  Schittmayer, Matthias;  Neshchadin, Dmytro;  Gescheidt, Georg;  Kollau, Alexander;  Mayer, Bernd;  Fischer, Roland C.;  Wallner, Silvia;  Macheroux, Peter;  Birner-Gruenberger, Ruth;  Breinbauer, Rolf<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('58','tp_links')\" style=\"cursor:pointer;\">A general approach for activity-based protein profiling of oxidoreductases with redox-differentiated diarylhalonium warheads<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Chem. Sci., <\/span><span class=\"tp_pub_additional_volume\">vol. 16, <\/span><span class=\"tp_pub_additional_number\">no. 15, <\/span><span class=\"tp_pub_additional_pages\">pp. 6240\u20136256, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2041-6539<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_58\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('58','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_58\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('58','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_58\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Krammer2025,<br \/>\r\ntitle = {A general approach for activity-based protein profiling of oxidoreductases with redox-differentiated diarylhalonium warheads},<br \/>\r\nauthor = {Leo Krammer and Barbara Darnhofer and Marko Kljajic and Laura Liesinger and Matthias Schittmayer and Dmytro Neshchadin and Georg Gescheidt and Alexander Kollau and Bernd Mayer and Roland C. Fischer and Silvia Wallner and Peter Macheroux and Ruth Birner-Gruenberger and Rolf Breinbauer},<br \/>\r\ndoi = {10.1039\/d4sc08454c},<br \/>\r\nissn = {2041-6539},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-04-21},<br \/>\r\nurldate = {2025-04-09},<br \/>\r\njournal = {Chem. Sci.},<br \/>\r\nvolume = {16},<br \/>\r\nnumber = {15},<br \/>\r\npages = {6240\u20136256},<br \/>\r\npublisher = {Royal Society of Chemistry (RSC)},<br \/>\r\nabstract = {&lt;jats:p&gt;A general chemoproteomic profiling approach for oxidoreductases with conceptually novel probes based on diarylhalonium salts is reported.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('58','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_58\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:p&gt;A general chemoproteomic profiling approach for oxidoreductases with conceptually novel probes based on diarylhalonium salts is reported.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('58','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_58\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1039\/d4sc08454c\" title=\"Follow DOI:10.1039\/d4sc08454c\" target=\"_blank\">doi:10.1039\/d4sc08454c<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('58','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">35.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Weinberger, Viktoria;  Mohammadzadeh, Rokhsareh;  Blohs, Marcus;  Kalt, Kerstin;  Mahnert, Alexander;  Moser, Sarah;  Cecovini, Marina;  Mertelj, Polona;  Zurabishvili, Tamara;  Arora, Bhawna;  Wolf, Jacqueline;  Shinde, Tejus;  Madl, Tobias;  Habisch, Hansj\u00f6rg;  Kolb, Dagmar;  Pernitsch, Dominique;  Hingerl, Kerstin;  Metcalf, William;  Moissl-Eichinger, Christine<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('52','tp_links')\" style=\"cursor:pointer;\">Expanding the cultivable human archaeome: Methanobrevibacter intestini sp. nov. and strain Methanobrevibacter smithii \u2018GRAZ-2\u2019 from human faeces<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">International Journal of Systematic and Evolutionary Microbiology, <\/span><span class=\"tp_pub_additional_volume\">vol. 75, <\/span><span class=\"tp_pub_additional_number\">no. 4, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1466-5034<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_52\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('52','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_52\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('52','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_52\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Weinberger2025,<br \/>\r\ntitle = {Expanding the cultivable human archaeome: Methanobrevibacter intestini sp. nov. and strain Methanobrevibacter smithii \u2018GRAZ-2\u2019 from human faeces},<br \/>\r\nauthor = {Viktoria Weinberger and Rokhsareh Mohammadzadeh and Marcus Blohs and Kerstin Kalt and Alexander Mahnert and Sarah Moser and Marina Cecovini and Polona Mertelj and Tamara Zurabishvili and Bhawna Arora and Jacqueline Wolf and Tejus Shinde and Tobias Madl and Hansj\u00f6rg Habisch and Dagmar Kolb and Dominique Pernitsch and Kerstin Hingerl and William Metcalf and Christine Moissl-Eichinger},<br \/>\r\ndoi = {10.1099\/ijsem.0.006751},<br \/>\r\nissn = {1466-5034},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-04-16},<br \/>\r\nurldate = {2025-04-16},<br \/>\r\njournal = {International Journal of Systematic and Evolutionary Microbiology},<br \/>\r\nvolume = {75},<br \/>\r\nnumber = {4},<br \/>\r\npublisher = {Microbiology Society},<br \/>\r\nabstract = {&lt;jats:p&gt;Two mesophilic, hydrogenotrophic methanogens, WWM1085 and &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; GRAZ-2, were isolated from human faecal samples. WWM1085 was isolated from an individual in the United States and represents a novel species within the genus &lt;jats:italic&gt;Methanobrevibacter. M. smithii&lt;\/jats:italic&gt; GRAZ-2 (=DSM 116045) was retrieved from a faecal sample of a European, healthy woman and represents a novel strain within this species. Both &lt;jats:italic&gt;Methanobrevibacter&lt;\/jats:italic&gt; representatives form non-flagellated, short rods with variable morphologies and the capacity to form filaments. Both isolates showed the typical fluorescence of F&lt;jats:sub&gt;420&lt;\/jats:sub&gt; and methane production. Compared to &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; GRAZ-2, WWM1085 did not accumulate formate when grown with H&lt;jats:sub&gt;2&lt;\/jats:sub&gt; and CO&lt;jats:sub&gt;2&lt;\/jats:sub&gt;. The optimal growth conditions were at 35\u201339\u2009\u00b0C and pH 6.5\u20137.5. Full genome sequencing revealed a genomic difference of WWM1085 to the type strain of &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; DSM 861 (=PS&lt;jats:sup&gt;T&lt;\/jats:sup&gt;), with 93.55% average nucleotide identity (ANI) and major differences in the sequence of its &lt;jats:italic&gt;mcrA&lt;\/jats:italic&gt; gene (3.3% difference in nucleotide sequence). Differences in the 16S rRNA gene sequence were very minor, and thus distinction based on this gene marker might not be possible. &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; GRAZ-2 was identified as a novel strain within the species &lt;jats:italic&gt;Methanobrevibacter smithii&lt;\/jats:italic&gt; (ANI 99.04% to &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; DSM 861 [=PS&lt;jats:sup&gt;T&lt;\/jats:sup&gt;]). Due to the major differences between WWM1085 and &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; type strain &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; DSM 861 (=PS&lt;jats:sup&gt;T&lt;\/jats:sup&gt;) in phenotypic, genomic and metabolic features, we propose &lt;jats:italic&gt;Methanobrevibacter intestini&lt;\/jats:italic&gt; sp. nov. as a novel species with WWM1085 as the type strain (DSM 116060&lt;jats:sup&gt;T&lt;\/jats:sup&gt; = CECT 30992&lt;jats:sup&gt;T&lt;\/jats:sup&gt;).&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('52','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_52\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&amp;lt;jats:p&amp;gt;Two mesophilic, hydrogenotrophic methanogens, WWM1085 and &amp;lt;jats:italic&amp;gt;M. smithii&amp;lt;\/jats:italic&amp;gt; GRAZ-2, were isolated from human faecal samples. WWM1085 was isolated from an individual in the United States and represents a novel species within the genus &amp;lt;jats:italic&amp;gt;Methanobrevibacter. M. smithii&amp;lt;\/jats:italic&amp;gt; GRAZ-2 (=DSM 116045) was retrieved from a faecal sample of a European, healthy woman and represents a novel strain within this species. Both &amp;lt;jats:italic&amp;gt;Methanobrevibacter&amp;lt;\/jats:italic&amp;gt; representatives form non-flagellated, short rods with variable morphologies and the capacity to form filaments. Both isolates showed the typical fluorescence of F&amp;lt;jats:sub&amp;gt;420&amp;lt;\/jats:sub&amp;gt; and methane production. Compared to &amp;lt;jats:italic&amp;gt;M. smithii&amp;lt;\/jats:italic&amp;gt; GRAZ-2, WWM1085 did not accumulate formate when grown with H&amp;lt;jats:sub&amp;gt;2&amp;lt;\/jats:sub&amp;gt; and CO&amp;lt;jats:sub&amp;gt;2&amp;lt;\/jats:sub&amp;gt;. The optimal growth conditions were at 35\u201339\u2009\u00b0C and pH 6.5\u20137.5. Full genome sequencing revealed a genomic difference of WWM1085 to the type strain of &amp;lt;jats:italic&amp;gt;M. smithii&amp;lt;\/jats:italic&amp;gt; DSM 861 (=PS&amp;lt;jats:sup&amp;gt;T&amp;lt;\/jats:sup&amp;gt;), with 93.55% average nucleotide identity (ANI) and major differences in the sequence of its &amp;lt;jats:italic&amp;gt;mcrA&amp;lt;\/jats:italic&amp;gt; gene (3.3% difference in nucleotide sequence). Differences in the 16S rRNA gene sequence were very minor, and thus distinction based on this gene marker might not be possible. &amp;lt;jats:italic&amp;gt;M. smithii&amp;lt;\/jats:italic&amp;gt; GRAZ-2 was identified as a novel strain within the species &amp;lt;jats:italic&amp;gt;Methanobrevibacter smithii&amp;lt;\/jats:italic&amp;gt; (ANI 99.04% to &amp;lt;jats:italic&amp;gt;M. smithii&amp;lt;\/jats:italic&amp;gt; DSM 861 [=PS&amp;lt;jats:sup&amp;gt;T&amp;lt;\/jats:sup&amp;gt;]). Due to the major differences between WWM1085 and &amp;lt;jats:italic&amp;gt;M. smithii&amp;lt;\/jats:italic&amp;gt; type strain &amp;lt;jats:italic&amp;gt;M. smithii&amp;lt;\/jats:italic&amp;gt; DSM 861 (=PS&amp;lt;jats:sup&amp;gt;T&amp;lt;\/jats:sup&amp;gt;) in phenotypic, genomic and metabolic features, we propose &amp;lt;jats:italic&amp;gt;Methanobrevibacter intestini&amp;lt;\/jats:italic&amp;gt; sp. nov. as a novel species with WWM1085 as the type strain (DSM 116060&amp;lt;jats:sup&amp;gt;T&amp;lt;\/jats:sup&amp;gt; = CECT 30992&amp;lt;jats:sup&amp;gt;T&amp;lt;\/jats:sup&amp;gt;).&amp;lt;\/jats:p&amp;gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('52','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_52\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1099\/ijsem.0.006751\" title=\"Follow DOI:10.1099\/ijsem.0.006751\" target=\"_blank\">doi:10.1099\/ijsem.0.006751<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('52','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">36.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Saeidi, Navid;  Lotteraner, Laura;  Sigmund, Gabriel;  Hofmann, Thilo;  Krauss, Martin;  Mackenzie, Katrin;  Georgi, Anett<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('64','tp_links')\" style=\"cursor:pointer;\">Towards a better understanding of sorption of persistent and mobile contaminants to activated carbon: Applying data analysis techniques with experimental datasets of limited size<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Water Research, <\/span><span class=\"tp_pub_additional_volume\">vol. 274, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 0043-1354<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_64\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('64','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_64\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Saeidi2025,<br \/>\r\ntitle = {Towards a better understanding of sorption of persistent and mobile contaminants to activated carbon: Applying data analysis techniques with experimental datasets of limited size},<br \/>\r\nauthor = {Navid Saeidi and Laura Lotteraner and Gabriel Sigmund and Thilo Hofmann and Martin Krauss and Katrin Mackenzie and Anett Georgi},<br \/>\r\nurl = {https:\/\/doi.org\/10.1016\/j.watres.2024.123032},<br \/>\r\ndoi = {10.1016\/j.watres.2024.123032},<br \/>\r\nissn = {0043-1354},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-04-15},<br \/>\r\nurldate = {2025-04-00},<br \/>\r\njournal = {Water Research},<br \/>\r\nvolume = {274},<br \/>\r\npublisher = {Elsevier BV},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('64','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_64\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/doi.org\/10.1016\/j.watres.2024.123032\" title=\"https:\/\/doi.org\/10.1016\/j.watres.2024.123032\" target=\"_blank\">https:\/\/doi.org\/10.1016\/j.watres.2024.123032<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1016\/j.watres.2024.123032\" title=\"Follow DOI:10.1016\/j.watres.2024.123032\" target=\"_blank\">doi:10.1016\/j.watres.2024.123032<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('64','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">37.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Wichmann, Natalie;  Meibom, Josephine;  Kohn, Tamar;  Zumstein, Michael<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('55','tp_links')\" style=\"cursor:pointer;\">Conserved specificity of extracellular wastewater peptidases revealed by multiplex substrate profiling by mass spectrometry<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Environ Chem Lett, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1610-3661<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_55\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('55','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_55\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('55','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_55\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Wichmann2025,<br \/>\r\ntitle = {Conserved specificity of extracellular wastewater peptidases revealed by multiplex substrate profiling by mass spectrometry},<br \/>\r\nauthor = {Natalie Wichmann and Josephine Meibom and Tamar Kohn and Michael Zumstein},<br \/>\r\ndoi = {10.1007\/s10311-025-01834-7},<br \/>\r\nissn = {1610-3661},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-04-12},<br \/>\r\njournal = {Environ Chem Lett},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt; Peptide-based chemicals are promising for numerous applications including home and personal care and medical treatments. To better understand and control the environmental fate of peptide-based chemicals, in-depth knowledge on the specificity of wastewater peptidases is needed. Here, we employed multiplex substrate profiling by mass spectrometry to obtain specificity profiles of extracellular peptidases derived from influent and aeration tanks of three full-scale wastewater treatment plants. Specificities were confirmed by fluorogenic peptidase substrates. Our results revealed highly similar specificity profiles across wastewater treatment plants. We found that hydrolysis by extracellular wastewater peptidases is favored when positively charged amino acid residues surround the cleavage site and disfavored when negatively charged amino acid residues surround the cleavage site.&lt;\/jats:p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('55','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_55\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt; Peptide-based chemicals are promising for numerous applications including home and personal care and medical treatments. To better understand and control the environmental fate of peptide-based chemicals, in-depth knowledge on the specificity of wastewater peptidases is needed. Here, we employed multiplex substrate profiling by mass spectrometry to obtain specificity profiles of extracellular peptidases derived from influent and aeration tanks of three full-scale wastewater treatment plants. Specificities were confirmed by fluorogenic peptidase substrates. Our results revealed highly similar specificity profiles across wastewater treatment plants. We found that hydrolysis by extracellular wastewater peptidases is favored when positively charged amino acid residues surround the cleavage site and disfavored when negatively charged amino acid residues surround the cleavage site.&lt;\/jats:p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('55','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_55\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1007\/s10311-025-01834-7\" title=\"Follow DOI:10.1007\/s10311-025-01834-7\" target=\"_blank\">doi:10.1007\/s10311-025-01834-7<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('55','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">38.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Quinn-Bohmann, Nick;  Carr, Alex V.;  Diener, Christian;  Gibbons, Sean M.<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('46','tp_links')\" style=\"cursor:pointer;\">Moving from genome-scale to community-scale metabolic models for the human gut microbiome<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Nat Microbiol, <\/span><span class=\"tp_pub_additional_volume\">vol. 10, <\/span><span class=\"tp_pub_additional_number\">no. 5, <\/span><span class=\"tp_pub_additional_pages\">pp. 1055\u20131066, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 2058-5276<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_46\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('46','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_46\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Quinn-Bohmann2025,<br \/>\r\ntitle = {Moving from genome-scale to community-scale metabolic models for the human gut microbiome},<br \/>\r\nauthor = {Nick Quinn-Bohmann and Alex V. Carr and Christian Diener and Sean M. Gibbons},<br \/>\r\ndoi = {10.1038\/s41564-025-01972-2},<br \/>\r\nissn = {2058-5276},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-04-11},<br \/>\r\nurldate = {2025-05-00},<br \/>\r\njournal = {Nat Microbiol},<br \/>\r\nvolume = {10},<br \/>\r\nnumber = {5},<br \/>\r\npages = {1055\u20131066},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('46','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_46\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1038\/s41564-025-01972-2\" title=\"Follow DOI:10.1038\/s41564-025-01972-2\" target=\"_blank\">doi:10.1038\/s41564-025-01972-2<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('46','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">39.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Kwon, Hyeonjun;  Shin, Jihoon;  Sun, Siqi;  Zhu, Rong;  Stainer, Sarah;  Hinterdorfer, Peter;  Cho, Sang-Joon;  Kim, Dong-Hwan;  Oh, Yoo Jin<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('61','tp_links')\" style=\"cursor:pointer;\">Vertical DNA Nanostructure Arrays: Facilitating Functionalization on Macro-Scale Surfaces<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">ACS Nano, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1936-086X<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_61\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('61','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_61\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Kwon2025,<br \/>\r\ntitle = {Vertical DNA Nanostructure Arrays: Facilitating Functionalization on Macro-Scale Surfaces},<br \/>\r\nauthor = {Hyeonjun Kwon and Jihoon Shin and Siqi Sun and Rong Zhu and Sarah Stainer and Peter Hinterdorfer and Sang-Joon Cho and Dong-Hwan Kim and Yoo Jin Oh},<br \/>\r\ndoi = {10.1021\/acsnano.5c03100},<br \/>\r\nissn = {1936-086X},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-04-09},<br \/>\r\njournal = {ACS Nano},<br \/>\r\npublisher = {American Chemical Society (ACS)},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('61','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_61\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1021\/acsnano.5c03100\" title=\"Follow DOI:10.1021\/acsnano.5c03100\" target=\"_blank\">doi:10.1021\/acsnano.5c03100<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('61','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_number\">40.<\/div><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Mohammadzadeh, Rokhsareh;  Mahnert, Alexander;  Shinde, Tejus;  Kumpitsch, Christina;  Weinberger, Viktoria;  Schmidt, Helena;  Moissl-Eichinger, Christine<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" onclick=\"teachpress_pub_showhide('4','tp_links')\" style=\"cursor:pointer;\">Age-related dynamics of predominant methanogenic archaea in the human gut microbiome<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">BMC Microbiol, <\/span><span class=\"tp_pub_additional_volume\">vol. 25, <\/span><span class=\"tp_pub_additional_number\">no. 1, <\/span><span class=\"tp_pub_additional_year\">2025<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 1471-2180<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_4\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('4','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_4\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('4','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_4\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Mohammadzadeh2025,<br \/>\r\ntitle = {Age-related dynamics of predominant methanogenic archaea in the human gut microbiome},<br \/>\r\nauthor = {Rokhsareh Mohammadzadeh and Alexander Mahnert and Tejus Shinde and Christina Kumpitsch and Viktoria Weinberger and Helena Schmidt and Christine Moissl-Eichinger},<br \/>\r\ndoi = {10.1186\/s12866-025-03921-9},<br \/>\r\nissn = {1471-2180},<br \/>\r\nyear  = {2025},<br \/>\r\ndate = {2025-04-04},<br \/>\r\nurldate = {2025-12-00},<br \/>\r\njournal = {BMC Microbiol},<br \/>\r\nvolume = {25},<br \/>\r\nnumber = {1},<br \/>\r\npublisher = {Springer Science and Business Media LLC},<br \/>\r\nabstract = {&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Background&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;The reciprocal relationship between aging and alterations in the gut microbiota is a subject of ongoing research. While the role of bacteria in the gut microbiome is well-documented, specific changes in the composition of methanogens during extreme aging and the impact of high methane production in general on health remain unclear. This study was designed to explore the association of predominant methanogenic archaea within the human gut and aging.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Methods&lt;\/jats:title&gt; &lt;jats:p&gt;Shotgun metagenomic data from the stool samples of young adults (&lt;jats:italic&gt;n&lt;\/jats:italic&gt;\u2009=\u2009127, Age: 19\u201359 y), older adults (&lt;jats:italic&gt;n&lt;\/jats:italic&gt;\u2009=\u200986, Age: 60\u201399 y), and centenarians (&lt;jats:italic&gt;n&lt;\/jats:italic&gt;\u2009=\u200934, age: 100\u2013109 years) were analyzed.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Results&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Our findings reveal a compelling link between age and the prevalence of high methanogen phenotype, while overall archaeal diversity diminishes. Surprisingly, the archaeal composition of methanogens in the microbiome of centenarians appears more akin to that of younger adults, showing an increase in &lt;jats:italic&gt;Methanobrevibacter smithii&lt;\/jats:italic&gt;, rather than &lt;jats:italic&gt;Candidatus&lt;\/jats:italic&gt; Methanobrevibacter intestini. Remarkably, &lt;jats:italic&gt;Ca.&lt;\/jats:italic&gt; M. intestini emerged as a central player in the stability of the archaea-bacteria network in adults, paving the way for &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; in older adults and centenarians. Notably, centenarians exhibit a highly complex and stable network of these two methanogens with other bacteria. The mutual exclusion between &lt;jats:italic&gt;Lachnospiraceae&lt;\/jats:italic&gt; and these methanogens throughout all age groups suggests that these archaeal communities may compensate for the age-related drop in &lt;jats:italic&gt;Lachnospiraceae&lt;\/jats:italic&gt; by co-occurring with &lt;jats:italic&gt;Oscillospiraceae&lt;\/jats:italic&gt;.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Conclusions&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;This study underscores the dynamics of archaeal microbiome in human physiology and aging. It highlights age-related shifts in methanogen composition, emphasizing the significance of both &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; and &lt;jats:italic&gt;Ca.&lt;\/jats:italic&gt; M. intestini and their partnership with butyrate-producing bacteria for potential enhanced health.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('4','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_4\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;jats:title&gt;Abstract&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Background&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;The reciprocal relationship between aging and alterations in the gut microbiota is a subject of ongoing research. While the role of bacteria in the gut microbiome is well-documented, specific changes in the composition of methanogens during extreme aging and the impact of high methane production in general on health remain unclear. This study was designed to explore the association of predominant methanogenic archaea within the human gut and aging.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Methods&lt;\/jats:title&gt; &lt;jats:p&gt;Shotgun metagenomic data from the stool samples of young adults (&lt;jats:italic&gt;n&lt;\/jats:italic&gt;\u2009=\u2009127, Age: 19\u201359 y), older adults (&lt;jats:italic&gt;n&lt;\/jats:italic&gt;\u2009=\u200986, Age: 60\u201399 y), and centenarians (&lt;jats:italic&gt;n&lt;\/jats:italic&gt;\u2009=\u200934, age: 100\u2013109 years) were analyzed.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Results&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;Our findings reveal a compelling link between age and the prevalence of high methanogen phenotype, while overall archaeal diversity diminishes. Surprisingly, the archaeal composition of methanogens in the microbiome of centenarians appears more akin to that of younger adults, showing an increase in &lt;jats:italic&gt;Methanobrevibacter smithii&lt;\/jats:italic&gt;, rather than &lt;jats:italic&gt;Candidatus&lt;\/jats:italic&gt; Methanobrevibacter intestini. Remarkably, &lt;jats:italic&gt;Ca.&lt;\/jats:italic&gt; M. intestini emerged as a central player in the stability of the archaea-bacteria network in adults, paving the way for &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; in older adults and centenarians. Notably, centenarians exhibit a highly complex and stable network of these two methanogens with other bacteria. The mutual exclusion between &lt;jats:italic&gt;Lachnospiraceae&lt;\/jats:italic&gt; and these methanogens throughout all age groups suggests that these archaeal communities may compensate for the age-related drop in &lt;jats:italic&gt;Lachnospiraceae&lt;\/jats:italic&gt; by co-occurring with &lt;jats:italic&gt;Oscillospiraceae&lt;\/jats:italic&gt;.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt; <br \/>\r\n &lt;jats:sec&gt; <br \/>\r\n &lt;jats:title&gt;Conclusions&lt;\/jats:title&gt; <br \/>\r\n &lt;jats:p&gt;This study underscores the dynamics of archaeal microbiome in human physiology and aging. It highlights age-related shifts in methanogen composition, emphasizing the significance of both &lt;jats:italic&gt;M. smithii&lt;\/jats:italic&gt; and &lt;jats:italic&gt;Ca.&lt;\/jats:italic&gt; M. intestini and their partnership with butyrate-producing bacteria for potential enhanced health.&lt;\/jats:p&gt; <br \/>\r\n &lt;\/jats:sec&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('4','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_4\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1186\/s12866-025-03921-9\" title=\"Follow DOI:10.1186\/s12866-025-03921-9\" target=\"_blank\">doi:10.1186\/s12866-025-03921-9<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('4','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><\/div><div class=\"tablenav\"><div class=\"tablenav-pages\"><span class=\"displaying-num\">819 entries<\/span> <a class=\"page-numbers button disabled\">&laquo;<\/a> <a class=\"page-numbers button disabled\">&lsaquo;<\/a> 1 of 21 <a href=\"https:\/\/www.microplanet.at\/index.php\/publications\/?limit=2&amp;tgid=&amp;yr=&amp;type=&amp;usr=&amp;auth=&amp;tsr=\" title=\"next page\" class=\"page-numbers button\">&rsaquo;<\/a> <a href=\"https:\/\/www.microplanet.at\/index.php\/publications\/?limit=21&amp;tgid=&amp;yr=&amp;type=&amp;usr=&amp;auth=&amp;tsr=\" title=\"last page\" class=\"page-numbers button\">&raquo;<\/a> <\/div><\/div><\/div>\n<\/section>\n<\/div>\n\n\n\n<section class=\"wp-block-group module-social bg-custom-purple-100 py-5 md:py-12 is-layout-flow wp-block-group-is-layout-flow\">\n<div class=\"wp-block-group container is-layout-flow wp-block-group-is-layout-flow\">\n<div class=\"wp-block-group flex justify-between items-center is-layout-flow wp-block-group-is-layout-flow\">\n<p class=\"text-white text-lg md:text-2xl has-beuys-font-family has-large-font-size\">Find us on social media<\/p>\n\n\n\n<div class=\"wp-block-group is-layout-flow wp-block-group-is-layout-flow\">\n<div class=\"wp-block-group flex items-center gap-7 md:gap-14 is-layout-flow wp-block-group-is-layout-flow\">\n<div class=\"wp-block-group w-5 md:w-10 is-layout-flow wp-block-group-is-layout-flow\">\n<figure class=\"wp-block-image size-full w-full object-contain\"><a href=\"https:\/\/www.facebook.com\/profile.php?id=61556523591267\"><img decoding=\"async\" src=\"https:\/\/www.microplanet.at\/wp-content\/themes\/microplanet\/assets\/icons\/mp_socialmedia_1.png\" alt=\"Facebook\" class=\"wp-image-132\" title=\"Facebook\"\/><\/a><\/figure>\n<\/div>\n\n\n\n<div class=\"wp-block-group w-5 md:w-10 is-layout-flow wp-block-group-is-layout-flow\">\n<figure class=\"wp-block-image size-full w-full object-contain\"><a href=\"https:\/\/www.threads.net\/@microbesplanet\"><img loading=\"lazy\" decoding=\"async\" width=\"512\" height=\"512\" src=\"https:\/\/www.microplanet.at\/wp-content\/uploads\/2024\/08\/threads-white-icon.png\" alt=\"\" class=\"wp-image-914\" title=\"Facebook\" srcset=\"https:\/\/www.microplanet.at\/wp-content\/uploads\/2024\/08\/threads-white-icon.png 512w, https:\/\/www.microplanet.at\/wp-content\/uploads\/2024\/08\/threads-white-icon-300x300.png 300w, https:\/\/www.microplanet.at\/wp-content\/uploads\/2024\/08\/threads-white-icon-150x150.png 150w\" sizes=\"auto, (max-width: 512px) 100vw, 512px\" \/><\/a><\/figure>\n<\/div>\n\n\n\n<div class=\"wp-block-group w-5 md:w-10 is-layout-flow wp-block-group-is-layout-flow\">\n<figure class=\"wp-block-image size-full w-full object-contain\"><a href=\"https:\/\/bsky.app\/profile\/microbesplanet.bsky.social\"><img loading=\"lazy\" decoding=\"async\" width=\"600\" height=\"535\" src=\"https:\/\/www.microplanet.at\/wp-content\/uploads\/2024\/08\/Bluesky_butterfly-logo_white.png\" alt=\"\" class=\"wp-image-915\" title=\"Facebook\" srcset=\"https:\/\/www.microplanet.at\/wp-content\/uploads\/2024\/08\/Bluesky_butterfly-logo_white.png 600w, https:\/\/www.microplanet.at\/wp-content\/uploads\/2024\/08\/Bluesky_butterfly-logo_white-300x268.png 300w\" sizes=\"auto, (max-width: 600px) 100vw, 600px\" \/><\/a><\/figure>\n<\/div>\n\n\n\n<div class=\"wp-block-group w-5 md:w-10 is-layout-flow wp-block-group-is-layout-flow\">\n<figure class=\"wp-block-image size-full w-full object-contain\"><a href=\"https:\/\/www.instagram.com\/microbesplanet\/\"><img decoding=\"async\" src=\"https:\/\/www.microplanet.at\/wp-content\/themes\/microplanet\/assets\/icons\/mp_socialmedia_2.png\" alt=\"Instagram\" class=\"wp-image-133\" title=\"Facebook\"\/><\/a><\/figure>\n<\/div>\n\n\n\n<div class=\"wp-block-group w-5 md:w-10 is-layout-flow wp-block-group-is-layout-flow\">\n<figure class=\"wp-block-image size-full w-full object-contain\"><a href=\"https:\/\/www.linkedin.com\/company\/cluster-of-excellence-microplanet\/?viewAsMember=true\"><img decoding=\"async\" src=\"https:\/\/www.microplanet.at\/wp-content\/themes\/microplanet\/assets\/icons\/mp_socialmedia_4.png\" alt=\"LinkedIn\" class=\"wp-image-135\" title=\"Facebook\"\/><\/a><\/figure>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/section>\n","protected":false},"excerpt":{"rendered":"<p>Filter results: e.g. name of key researcher Find us on social media<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-143","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.microplanet.at\/index.php\/wp-json\/wp\/v2\/pages\/143","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.microplanet.at\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.microplanet.at\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.microplanet.at\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.microplanet.at\/index.php\/wp-json\/wp\/v2\/comments?post=143"}],"version-history":[{"count":94,"href":"https:\/\/www.microplanet.at\/index.php\/wp-json\/wp\/v2\/pages\/143\/revisions"}],"predecessor-version":[{"id":5632,"href":"https:\/\/www.microplanet.at\/index.php\/wp-json\/wp\/v2\/pages\/143\/revisions\/5632"}],"wp:attachment":[{"href":"https:\/\/www.microplanet.at\/index.php\/wp-json\/wp\/v2\/media?parent=143"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}